Lolium perenne (perennial ryegrass): 127344106
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Entry
127344106 CDS
T08650
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
127344106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lper04121
]
127344106
03036 Chromosome and associated proteins [BR:
lper03036
]
127344106
Enzymes [BR:
lper01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127344106
Ubiquitin system [BR:
lper04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127344106
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
127344106
Noncanonical PRC1 (PRC1.1)
127344106
Noncanonical PRC1 (PRC1.3/1.5)
127344106
Noncanonical PRC1 (PRC1.6)
127344106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_6
zf-UDP
zf-rbx1
zf-Nse
TRAF3_RING
zf-RING_11
Dicer_dsRBD
zf-C3HC4_5
zf-RING_10
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
127344106
NCBI-ProteinID:
XP_051226284
LinkDB
All DBs
Position
3:complement(264712206..264725836)
Genome browser
AA seq
477 aa
AA seq
DB search
MPAQKRQRPSPSSKPRDHVEANGTDASTAGGARGEGGGIQPVPGGGAANRATDPQPRRVG
DSGSAERGGGGAYSDSESSQSDGDMDEFILVKLAEIRKEVQCPICLGIIRKTRTVMECLH
RFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPDIDKYEEEEFAFSE
EEKTRNKKIQATIEETIRKQSEAIGKKCSTAKATATAFARKYRRNMRTRGRGRTVARDIV
LTVSDNEDREEVNANDASKESSSADNHSPDLKQKRGRKRPPPLPSPDRIIASSDHGSEEN
GEPVSVKENFTSSPLRGEMLAWGKNGTRSQIRHGNVGGLNCRLGKGGRVAKLVEHLRTTD
EMDKEFNLYLVLLPLDGKATPELEKPYLSCRPTVSIRHLVQLIALQLSRQVEELEIYMRM
DLHNRGVATDSSSAETNPRLFDGLERLSGDKLLSDLGLSFASGRNDVELLYALKTQD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcagaagcgccagcgcccttcgccgtcgtccaaaccacgcgaccacgtggag
gccaacgggacggatgcttccacagccggcggcgcccggggcgagggaggaggaatccaa
ccggtaccgggcggaggcgccgccaatcgggcgaccgacccgcagccgcggcgcgtaggc
gattcgggaagcgcggagcgcggcggcggcggcgcgtacagcgacagcgagtcgtcgcag
agcgacggcgacatggacgagtttatactagtgaaattagctgaaatccggaaggaagtc
cagtgccctatttgtttaggaattatccgaaagacaagaacggttatggaatgtttgcac
cgattctgcagggattgcattgataaatctatgcggctcggaaataatgagtgcccggca
tgccgcactcattgtgcaagcaggcgttctttaagggacgatcctaattatgatgcactg
attgcaaccttataccccgatattgacaagtatgaggaagaggaatttgctttcagtgaa
gaggaaaagactcggaataagaagattcaagcaaccattgaggaaacgattcgaaaacag
tcagaggccataggtaagaaatgttccacagcaaaagccactgccactgcttttgcaagg
aagtacagaagaaatatgcgaacacgtgggagaggtagaactgttgctcgtgatattgtc
cttactgtctccgacaatgaggatagagaagaagtaaatgctaatgatgccagcaaagag
tcgtcttctgctgataaccactctccagatttaaagcagaaaagaggtagaaagaggcct
ccaccactaccttctcctgatagaatcattgccagtagtgaccatggatctgaggagaat
ggtgaaccagtatctgttaaagaaaatttcacaagctctccattgcggggggagatgctt
gcatggggaaaaaatggcacacgtagccaaattcgacatggcaatgttggtggcttaaat
tgcagactgggaaagggcggacgtgttgcgaagttggtggagcacctccgtacaactgat
gaaatggataaagagttcaacttgtatcttgttctccttcctcttgatggaaaagcaaca
cctgaattggaaaagccctatctaagttgtcgaccaactgtatcaattcgacacctcgta
cagctaattgctctccagttgtctcggcaagttgaagaacttgagatctatatgaggatg
gaccttcacaatagaggtgttgcaacagactcaagttctgctgagacaaatccgcggcta
tttgatggcttggaaagattgagtggagataagcttctttctgatcttggcctgtcattt
gcctctggtcgcaacgatgtggaactgttatatgctttgaaaactcaagactag
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