Lolium perenne (perennial ryegrass): 127344215
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Entry
127344215 CDS
T08650
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03008
Ribosome biogenesis in eukaryotes
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127344215
09123 Folding, sorting and degradation
03018 RNA degradation
127344215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127344215
03019 Messenger RNA biogenesis [BR:
lper03019
]
127344215
03009 Ribosome biogenesis [BR:
lper03009
]
127344215
03016 Transfer RNA biogenesis [BR:
lper03016
]
127344215
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127344215
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
127344215
Ribosome biogenesis [BR:
lper03009
]
Eukaryotic type
Pre-60S particles
RNases
127344215
Transfer RNA biogenesis [BR:
lper03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127344215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
127344215
NCBI-ProteinID:
XP_051226392
LinkDB
All DBs
Position
3:complement(286245108..286271954)
Genome browser
AA seq
1055 aa
AA seq
DB search
MGVPSFYRWLAEKYPMLVVDVVEEEPVEIEGVQVPVDTSRPNPNGLEYDNLYLDMNGIIH
PCFHPEDRASPTTFAEVFQCIFDYIDRLFIMVRPRKLMYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEEKLREEFEREGRKLPPKNQSQTCDSNIITPGTEFMAVLSVALQYYIHL
RLNYDPGWKQIKVILSDANVPGEGEHKVMSYIRGQRNLPGFNPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFICGQVGHLAAKCEGKAKRKAGEYDEKGDEIVPKKP
YQFLNIWTLREYIEYEFKMPNPPFEIDLERIIDDFIFMCFFVGNDFLPHMPTLEIREGAI
NLLMAVYKKEFPSMGGYLTDACTPDLNRVEHFIQAVGAFEDRIFQKRTQIHKRQAERAKR
DKAQAKRGDDLDPHVRSDLIVPVARFQGSRLASGSVAAPYEQNGSRKDSTEKGSRDKKAR
VSTSGSSLSAAVVEAEIGLEAQERENKEDLKSMLKDALREKSDLLNSENQEEDNVKLGEP
GWRERYYENKFGARTPEQIEEIRTDVVLKYTEGLCWVMHYYYEGVCSWTWFYPYHYAPFA
SDLKGLGQLDITFELGSPFKPFDQLMGVFPAASSHALPLQYRQLMSDPSSPIIDFYPIDF
EVDMNGKRFSWQGIAKLPFIDEARLLAEIKKVEHTLTPEEARRNSTMYNMLFVNGSHPIS
PYIYSLSSKFGHLSDNERNEIKEQLDPSASGGMNGYISLCGGDPSPPVFRSPVDGLEDIM
DNQVISTIYKLPDPHKHIARPPVGVIIPKKIVEAGDLKPPPVLWHEDSGRRAYDNNNRRH
SDYSSRPNPAGAIHGRQLGEAAHRLVVNSLNVRGGGQYAPARPYQTIMNGMHYPNGMPPR
MEQPAGRPGWHVPSDIPNGHGPPYAPPSGHQYTRDNRGRHQSYARDSHNDSRGVGRHQSG
HHQSSSHSYSSHPAPPSSGFGRYGQPPSHTGGYSAAYQPAPYAGAQQWQQQQPHSSYSGG
GAPPARPNSRPHQSQNRYGTLDRTSNRRPPGQGRY
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcccatcgttctaccgctggctggcggagaagtaccccatgctggtggtggac
gtggtggaggaggagcccgtcgagatcgagggcgtccaggtgcccgtcgacacctccagg
cccaaccccaacggcctcgagtacgacaacctctacctcgacatgaacgggatcattcac
ccctgcttccaccccgaggacagggcctcgccaacaacatttgccgaggtcttccagtgc
atatttgattacatagatcggctctttatcatggttcgccctcgcaagcttatgtacatg
gccattgatggtgtggcacctcgcgctaagatgaaccagcagcgctcgaggcgattcaga
gctgcaaaagatgcagctgacgcggctgctgaagaagaaaaattgcgtgaagagtttgag
agggaaggcagaaaacttcctccaaaaaatcaatcgcaaacctgtgactctaatattatt
actccagggacagagtttatggctgttctatcagttgctttgcagtactacatccatctc
agattgaattatgatcctgggtggaaacagattaaagttattctttctgatgccaatgtt
cctggtgaaggggaacacaaagttatgtcctatattcgtggccaaaggaatctccctgga
tttaacccgaataccagacattgtctgtatggcctggatgcagatcttatcatgttagct
ttagcaacacatgaagtacacttctccatactgagagaggtggtttttacacctggacag
caggataaatgcttcatatgtggccaagttggacatctagcggcaaaatgtgaaggaaag
gcaaaacggaaagctggggagtatgatgagaagggtgatgaaattgtaccaaagaaacct
taccagttcttgaatatatggaccctacgggaatacatagaatacgagttcaaaatgcca
aatccaccttttgagatcgatcttgaacgtatcattgatgatttcatcttcatgtgcttt
tttgttggcaatgattttcttccacacatgccaacactagagatccgtgagggagctatt
aatttgctaatggctgtatacaagaaggaatttccttcaatgggtggctatttaactgat
gcttgcacgccggatctgaatagagttgaacacttcattcaggcagttggtgcgttcgag
gatagaatatttcagaaaagaactcaaattcacaagcgtcaagcggaaagagcaaaacgt
gataaggcccaagcaaagcgaggtgatgatctggatccccatgtcaggagtgatcttatt
gtgcctgttgcacgtttccaagggtctcgccttgcctctgggtctgtagctgcaccctac
gaacagaatggctctcgtaaagatagtaccgaaaagggcagccgagataagaaagcacgt
gtttcaacatcaggttccagcctttctgctgctgttgttgaagctgaaattggccttgaa
gcacaggaacgtgagaacaaagaagatttgaagtcgatgctaaaagatgcacttcgtgag
aaatcagatcttcttaattctgaaaatcaagaggaggacaatgtaaagcttggagaacct
ggatggagggaaaggtactacgaaaataagtttggggcaagaacacctgagcagattgaa
gaaatacgtacagatgttgttctcaaatatactgaaggtttgtgttgggtaatgcactac
tattacgaaggtgtctgctcatggacatggttttacccttaccactatgccccttttgct
tcggatttaaaaggactaggccagcttgatataactttcgaactcgggtcacctttcaaa
ccatttgatcagcttatgggagtttttccagcagcgagctcgcatgcactccctctacag
tatcggcaattgatgagtgatccaagttcgcctataattgatttctatccgattgatttt
gaggtcgatatgaatggaaaacggttttcttggcaggggatagcgaaactgccctttatt
gatgaagctaggttgctggctgagattaaaaaagttgaacatactttgacgcctgaagaa
gcaaggcgaaacagtacaatgtacaatatgctttttgtgaatgggtcccatccgatttcg
ccctatatctactctctcagcagtaaatttggacatctatctgataatgagcgaaatgaa
attaaagaacagctcgatccttctgctagcggaggaatgaatggttacatctcactttgt
ggtggggatccaagcccgcctgtcttcaggtctcctgtggatggactagaagatattatg
gacaatcaagtgatatctacaatttacaagcttccagatcctcacaagcacatagcacgc
ccacctgttggtgttatcatacccaagaagattgtcgaagctggtgatctgaaaccacca
cctgttctgtggcatgaagacagtggcaggagggcttatgataataataatagaaggcat
tctgattacagtagcaggccaaaccctgcaggagcgatacatggccgccaacttggggaa
gctgcccaccgactagttgtgaacagcttgaatgttcgcggcggtgggcagtatgctccg
gctaggccgtatcaaactataatgaatggtatgcattatccaaacggaatgccaccaagg
atggagcagcctgctggacgtcctggttggcatgttcctagcgatataccaaatggtcat
ggaccaccttatgcaccgccatcaggtcatcagtatacaagagataatcgcggaagacac
caatcttatgcaagagatagccacaatgattcgagaggagtgggtcggcatcaatctgga
caccatcagagtagtagccactcatactcatcacatcccgctcctccatcatcgggtttt
ggacgttatgggcaacccccatctcacactggggggtatagtgctgcctaccagcctgca
ccatatgcaggggcccagcagtggcagcagcaacaacctcatagttcctattcagggggt
ggggcacctcctgcaaggcctaattcacgaccacatcaatcacaaaaccgctacggcacc
ttagataggacttcaaacaggagaccaccaggtcagggccgctactag
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