Lolium perenne (perennial ryegrass): 127344375
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Entry
127344375 CDS
T08650
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03420
Nucleotide excision repair
lper04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127344375
09124 Replication and repair
03420 Nucleotide excision repair
127344375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lper04121
]
127344375
03400 DNA repair and recombination proteins [BR:
lper03400
]
127344375
Ubiquitin system [BR:
lper04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
127344375
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
127344375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
Beta-prop_Vps41
WDR54
Beta-prop_VPS8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
127344375
NCBI-ProteinID:
XP_051226595
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Position
3:279301736..279306099
Genome browser
AA seq
453 aa
AA seq
DB search
MWLEEVRRRERGELRVRRFKALARSRRAASLALSNRKEIATPHHGAVNSLQVDLTEGRYL
LSGASDGSAAVFDLNNATEYEAGFIAKHRNILLVDRQHEHGHKFVVSAAIWYPVDTGLFV
TASFDTYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVRLCDIASG
AFTHTLSGHHDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFLVLDQLRSQQGRRP
PFLDSAMEKQDQKNLTSSPSSKSNSVQQRTGSRKKHSKALHKSQTLIRGHTQQRVHPGMS
SSQNRTTAHYGAVTGLKTTTDGMHLLSSGSDSRLRIWDVDSGCNTLVNFEAMRLHAGKPL
QLAVTDDPSLVFVPCMGSIKAYNMWSGTTFQTFRGHYDHVNCCYYNSQDQELYTGSNDRQ
ILVWSPATPALTEMEDDDKRQEGFAADEDNWSD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtggttggaggaggtgagaagaagggaacgcggggagctgcgcgtgcggcgcttcaag
gcgctcgcccggtcgcgccgcgccgcctcgctcgcgctctccaaccgcaaggagatcgcc
accccgcaccacggcgccgtcaactccctccaggttgatttgacagaggggaggtacctg
ctctcgggggcgtcggatgggtcggccgctgtcttcgatttgaacaacgcgacggaatac
gaagccgggttcattgccaagcacaggaacatcctgctcgtcgacaggcagcacgagcat
ggccacaagttcgtcgtctcagcggccatctggtaccccgtggacaccggcctcttcgtt
acagcgtccttcgatacctatgtcaaagtgtgggacaccaactcgactcaggtagtcatg
gattttaagatgcctggaaaggtctacagcgccgcgatgtctccgatcgcgacaacgcat
atgctcatcgcgacaggaagtgcggatgttcaggtccgtttgtgtgatattgcttctgga
gcctttacccacacgttgtcaggtcatcatgatggtatcatgtctttggagtggtctacc
tccagcgagtggatcttgatgagtggtggctgcgatggggctatacgattttgggacata
agacgagcaggatgcttccttgtcctcgatcagttacggtctcagcaaggaagacgacct
ccttttcttgatagcgccatggagaaacaggatcagaagaacttaacatcttcaccttct
tcaaagagtaactcagttcagcagaggacaggcagtcgtaagaagcattcgaaagcacta
cacaaaagtcaaactctgatacgtggacatacacaacagagagtacatccgggtatgtca
tccagtcaaaatcgtacaacagctcactatggtgctgttacagggttaaaaacaactaca
gatgggatgcaccttcttagctcaggatccgattctcgattaaggatatgggatgttgat
tcaggctgcaatactttggtcaattttgaagccatgcgattgcatgctggcaagccacta
caattagctgtcactgatgatccatcacttgtatttgttccatgcatgggtagcatcaag
gcatacaatatgtggtctggtacgacatttcaaacattccgtgggcattatgaccatgtg
aattgctgctactataactcacaagaccaagaactctatactggtagcaatgatagacaa
attcttgtgtggtctcctgcaactcccgctttgactgaaatggaggatgatgacaagcgg
caagagggctttgcagctgatgaagataactggagtgactga
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