Lolium perenne (perennial ryegrass): 127344616
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Entry
127344616 CDS
T08650
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127344616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127344616
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127344616
mRNA degradation factors
5'-3' decay
Decapping complex
127344616
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
127344616
NCBI-ProteinID:
XP_051226886
LinkDB
All DBs
Position
3:complement(247067828..247074567)
Genome browser
AA seq
804 aa
AA seq
DB search
MLGVEADSGGGGGASSSSAADSFDAGQYAFFGKEPREGLELGCLEVDGGHGNGGGFSGAE
EGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTVSGTRNPGVIGDRRSISRGSSLTVD
WAEDAEFPNYQDILENEEFQDGKRWWSQSHSMVQPGDSKPLSRTTSYPQQPLQHRLSEPI
TAPKSPPFTSFPPPGGRSPYPAQGLTRHGSIPSFGAGVQMGSPSMQLPGSPYNMVGLPHG
LPYGGSMPFGGPNLHVSNPMQNDWSNQANLFSGEHLNLLPNLLQKQISLPNNPMSSLLFS
QQQQRLAQLQPSHQNYLNIPPHLFYHHHPPEMTGRFESATSLPSSRDKRSRSGRGKHSLR
FSQPPSDTTGSQNGESGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQACIAK
KGTSTKQKTNFAPTSMKDLPSKSRSSGDQHAYLQVDALGRVSFSSIRRPRSLLEVDLPSS
GEGSHDQKSSVRSLEKEPMLAARVTVEDAIGLLLEVEDIDRLLQSSQAQENSFQLRRRRQ
VLLEGLAASLQLVDPLGPSKSAHSSGLAPKDDIVFLRIVSLPKGRKLLARYLRLVVPGSE
LTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSSCVHHMELGALSACLAAVVCSS
EQPPLRPLGSSAGDGASLIIKSVLDQATELLTDQNTVSSYTPSNRALWQASFDAFFGLLT
KYCLSKYESILQMFVMQASGSVIGSEASRATSREMPVELLRASLPHTNEQQRQMLLDFAQ
RTTPASSFNPPGASGHITSESVPG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgctgggcgtcgaggcggacagcggcggcggcggcggcgcttcctcctcctccgccgca
gatagctttgacgcggggcagtacgccttcttcgggaaggagccgcgcgaggggctcgag
ctcggttgcttggaggttgatggtggccatggcaatggcggtggattcagcggggcggag
gaggggctgtaccgcctctcctcggttggagaagagattgataatttaagcaacttgtcg
gacgtcgatgatcttgcgagcactttcgctaagttgaaccgaacagttagtggaacacgg
aatcctggtgttattggtgacagacgatccatctcaagaggaagttctttaactgttgat
tgggctgaggatgcagaatttccgaattatcaggatatattagaaaatgaggaattccag
gatggtaaaagatggtggtcgcagtcacattctatggtgcagccaggggactctaaacca
ttaagccgaacaacctcctatcctcagcagccactgcagcaccgtttaagtgaacctatc
acagcaccaaagtctcctccatttacctcgtttccacctccaggtggcagatcaccgtat
cctgctcaaggtcttacacgtcatgggagcattccatcatttggagcgggagtacagatg
ggttctccgagcatgcagctgccaggttctccgtataatatggttggattacctcatgga
ctaccatatggaggaagcatgccttttggtggtcctaatctgcatgtaagcaatccaatg
caaaatgactggtccaaccaggccaacctgttcagtggggagcaccttaatctactgcca
aacttattacagaaacaaatatcacttccgaataacccaatgtcatcactgctattctct
cagcaacagcagagattggcgcagctccaaccatcacatcagaattacctgaatatacca
ccccatctgttctaccaccatcatcccccagagatgacaggcaggtttgaatctgctaca
agtcttccttcatcaagagacaagagatcacgatcaggaaggggaaaacacagtttgcgt
ttttctcaaccaccatctgatactactggtagtcagaatggtgagagtggtggactaaag
ttcagatccaagtacatgtcatctgaagagattgagtctatcctaagaatgcagcactca
gcaagtcacagcagtgatccttatgttgttgattattaccaccaagcttgcatcgcgaaa
aagggtactagtactaagcaaaagaccaatttcgccccaacatcaatgaaagatttgcct
tccaagtcccggtcaagtggtgaccagcatgcatatcttcaggttgatgctcttgggaga
gtttctttctcttccatacgcaggcctcggtctcttcttgaagttgaccttccttcatca
ggtgagggttctcatgatcagaagtcttctgtgaggtctctggagaaagaaccaatgctg
gcagccagggtcactgttgaagatgccattggtcttcttcttgaggtggaagatattgac
aggctcctgcagtctagccaggcacaggagaacagtttccaactgaggcgaaggcgacaa
gtcctccttgaaggtctagctgcatcacttcagctggtcgaccctcttgggcctagcaag
tctgctcattcatctggtttagccccgaaggatgatattgtcttccttcgcattgtttct
cttcccaaaggacgtaagcttctggctcgttacctccggcttgttgtccctggaagtgag
ttgacgaggattgtatgcatggctattttccgacatctgaggttcttgtttgggggttta
ccatcagattcgagtgcagcagagacaacagttgctctggcaaagactgtttcgtcttgt
gttcaccatatggagctcggtgctcttagtgcttgccttgctgcagtagtgtgttcatct
gaacagccacctctccgtcctcttggtagctctgctggcgatggggcttctcttattatt
aaatcagtactggatcaagcaactgaattactgactgatcagaatactgtatccagctat
accccgtcaaacagagctctctggcaggcatcattcgacgctttctttgggcttctgaca
aaatactgtctcagtaagtatgaaagtattctgcagatgtttgtcatgcaggcatcgggc
tctgtcattggatccgaagcctcccgagcaactagcagggaaatgccagttgaactacta
cgcgcaagccttcctcatacaaacgaacagcaacgccagatgctgctcgatttcgctcag
agaaccacgccagccagcagttttaatccccctggtgctagtggacacatcacttctgaa
tcagttcctggttga
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