Lolium perenne (perennial ryegrass): 127344622
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Entry
127344622 CDS
T08650
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127344622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lper03019
]
127344622
03012 Translation factors [BR:
lper03012
]
127344622
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127344622
Messenger RNA biogenesis [BR:
lper03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127344622
Translation factors [BR:
lper03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127344622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
DEAD
R3H
OB_NTP_bind
HA2_N
Ank_5
AAA_22
nSTAND3
AAA_19
Ank_2
ATPase
ResIII
Rad17
AAA_16
AAA_23
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
127344622
NCBI-ProteinID:
XP_051226894
LinkDB
All DBs
Position
3:complement(247390668..247399307)
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AA seq
1164 aa
AA seq
DB search
MGRKKPNDGPPPADLPEEKMLRFRAVLRDFKASHEQVYKFDASLSKAERGAIHQMCRKMG
LKTKSTGNGDARRLGIYKYQRKNNKSTQEPAEGPSRLGFSKEATQVLLDLFTHYPPDEAE
LNGDAVKKSGKKAARIPWKRDGAFRRPTMSGRDIAKKVEMLTSNTSGQLRKIAEDRSKLP
ISSFKDHICSTLENHQVVLISGETGCGKTTQVPQYILDYVWGKGESCKIICTQPRRISAT
SVAERISAERGEAVGNTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNVQTAQNVT
HSFDDPIMEITHIIVDEIHERDRYSDFMLAILRDLLPMYPHLHIVLMSATINADRFSQYF
NGCPVIEVPGHTYPVKTFYLEDVLSILQSVDDNHLHPASDDLELKTVLTDEYKSSLDEVI
SMALVNDEFDPLIELISVEQNPEVFNYSHSETGVTPLMVFAGKGQLGDVCMLLSFGVDCS
ARDHDGKSALDWSQQENQKEVYEVIKKHMDCTPAKSPEENDLLNKYLATISPEHIDTVLI
ERLLKKLCADSSEGAVLIFLPGWEAINKTRERLLASSIFRDSSKFHVLSLHSMIPSSEQR
KVFQRPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNSVSTLQTSWVSRA
SARQREGRAGRCQPGTCYHLYSRLRAASLQEYQTPEINRMPIEELCLQIKLLDPNCRIAD
FLKKTLDPPVSETVKNAITVLQDLGALTQDEQLTDLGEKLGSLPVHPSTSKMLLFAILMN
CLDPALTLACAVDYRDPFVLPVDPDQRKRADAAKIELASLYGGFSDQLAVVAAFDCWRCA
KDTGQKALFCSQYFVNSNTMTMLSSMRKQLQNELAQRGFLPAEASACNLNAKASGIISAV
LMAGAYPMVGKLLPPCKNARSTVVETASGAKVRLHPSSANYNLSLNKSSGYPLVIYDEIT
RGDGGTLSIKKCSVVGSYPLLLLASEMAVAPPDGDNDEEEGSSGDEVIMSSPDNTVSVVV
DRWLRFHATALDVAQMYCLRERLVSAILFKVQHPQDVLPPALGATMYAIACILTYDGLPA
MVQCNTGAFDSRPAERRGGGYIRPNDFLTSLLTDRVAPLAEYLSPENILPPSAGDSLPSK
TVPGPSAPQSSKRQRDSARRRRPQ
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggggcggaagaagcccaatgacggacctccacccgccgacctgccggaggagaagatg
ttgcgcttcagggcagtgctcagggacttcaaggcctcccacgaacaggtgtacaaattc
gatgctagtctatccaaggcagagcgtggcgcaatccatcaaatgtgtagaaagatgggc
ttgaaaacgaaaagtaccgggaatggggatgctcgacgccttgggatttacaaataccaa
cgtaaaaataataaatccacacaggagcctgcagaaggccctagcagacttggattttct
aaagaagcaacacaggttttgctagatttgtttacgcattatcctcccgatgaagctgag
ttaaatggtgatgccgtcaagaaatctggcaagaaggctgcaagaattccgtggaaaaga
gatggtgcctttcgcaggccaactatgagcggacgtgatatagcaaagaaggttgagatg
cttacatctaacacaagtggacagctgaggaagatcgctgaagacagatccaaacttccg
atatcatccttcaaggatcacatttgttctactctggaaaaccaccaggtggttcttatt
tctggagaaacaggctgcggtaaaactacccaggttcctcaatatatcttggattatgtg
tggggcaagggtgaatcatgtaagatcatatgtactcagccgcgacggatatcagctact
tcagttgccgaacgaatatctgctgaaagaggagaggctgttggtaacacagttgggtac
aagatacgtttggagtcaaaaggagggaagaattcgtcaatcatgttctgtactaatggt
gttcttttgaggctgttgataggcagagtaactaacgttcaaacagcacaaaatgtgaca
cactcatttgatgatcccattatggagataacacacatcattgtggatgaaatccatgaa
agggataggtattccgatttcatgttagctatcctgagagatttgctgccgatgtatccg
catcttcatatagtgctcatgagtgcaacaatcaacgctgaccgtttttctcagtatttc
aacggatgcccggttattgaagtccctggccatacctaccctgttaaaactttctatttg
gaggatgtgctttctattctgcaatctgtagatgataatcatcttcatcccgcatcagat
gatctggagctgaagactgtgttaaccgatgagtacaaaagctcactggatgaagtaatt
agtatggctttggtcaatgatgaatttgatcctctcattgagcttatttctgtagagcag
aacccagaagtcttcaactactcacattcagaaactggtgtgacacctttgatggttttt
gctggaaaaggtcaacttggggatgtctgcatgcttctatcatttggtgtggattgttct
gcacgtgatcacgatggaaaatctgcattagattggtctcagcaagagaatcagaaagag
gtttatgaagtaataaaaaaacacatggattgtactccagcaaaatcacctgaagagaat
gatcttcttaataaatacttagcaactatcagtccagagcacatagatactgtgctgata
gaacgcttgcttaaaaagttatgtgctgattcaagtgaaggagctgtattgatcttcctt
cctggttgggaagctataaataaaacaagagagaggttacttgcttcttccatctttcgg
gattcatcaaaattccatgtgctgtctctccattccatgatcccatcttcagagcagaga
aaggttttccaacgtccacctgctggggttcgtaaaattattctctcaacgaacatagcg
gagactgcagtaacaattgatgatgttgtatttgtcatagatagtggaagaatgaaagag
aaaagttatgatccgtataatagtgtgtccacgcttcaaacttcctgggtttctcgagct
agtgcaaggcagcgtgaagggcgtgctggtcgttgtcagccaggaacttgctaccatctt
tactctagattgcgagcagcttcactgcaagaataccaaactcctgaaattaataggatg
ccaattgaagaactatgtttgcagatcaaactgcttgatccaaactgcagaatagcagac
tttctaaagaagaccttggatcctccagtttctgagactgtaaaaaatgctattactgtg
cttcaggatcttggtgctttaacacaagatgaacagttgacagatttgggtgaaaagtta
ggttctcttccggttcatccatccacaagcaagatgctcctgtttgctatattgatgaac
tgccttgatcctgcattgacattggcatgtgcagtagattatagagatcctttcgtcctt
ccagtcgatccagatcagagaaaaagagccgatgcagccaaaatcgagcttgcttcatta
tatggtggatttagcgaccagcttgctgttgtggcagcatttgattgttggagatgtgct
aaagacacgggccaaaaagctttgttttgttcacaatattttgtcaattcaaacaccatg
actatgttgtcaagtatgcgaaaacagcttcagaatgaactagctcaaagaggatttctt
cctgctgaagcatctgcctgcaacttaaatgctaaagcttcaggtatcattagcgcagtc
cttatggctggtgcttaccccatggttggaaagctgcttcctccttgcaaaaatgccagg
agtacagttgtggaaacagcaagtggtgccaaagttcgattgcatccgtcttctgcaaac
tataacttgtcattaaataaatcttctggatatccgctagtcatatatgatgaaattact
cgaggtgatggtgggacgttgtctataaagaaatgttctgtcgttgggtcatatccacta
cttctgcttgcttccgaaatggctgttgctccacctgatggtgataatgatgaagaggaa
ggttccagtggggatgaagtgattatgtcttctcctgataacactgtttcagttgttgtt
gaccgctggctcagatttcatgcgacagctcttgatgttgctcaaatgtactgcctaaga
gaacgtctagtatctgctatacttttcaaagtccaacacccgcaggatgttctcccacct
gctcttggagcaacgatgtatgccattgcatgtatcttgacatatgatggcttgcctgct
atggttcaatgtaacaccggtgcttttgattcaaggccagcagaaaggagaggtggtggt
tatattcgacctaatgatttccttacgtcattgctaacggacagagtcgcaccacttgcc
gagtatctttctccggagaatattctgcccccaagtgctggtgatagtctacccagcaaa
actgtaccagggccttcagcaccacaatcttccaaaaggcagcgtgacagtgctcggcgc
cggaggcctcaatag
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