Lolium perenne (perennial ryegrass): 127345290
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Entry
127345290 CDS
T08650
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lper
Lolium perenne (perennial ryegrass)
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lper03036
]
127345290
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
127345290
microRNA pathway
RISC loading complex
127345290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
dsrm
SWI2_SNF2
Dicer_dsRBD
DND1_DSRM
PCDO_beta_N
Motif
Other DBs
NCBI-GeneID:
127345290
NCBI-ProteinID:
XP_051227699
LinkDB
All DBs
Position
3:complement(303725672..303737145)
Genome browser
AA seq
1659 aa
AA seq
DB search
MADLGAAAGRGGDDAMDAAAGPPTAAEVEAAPVPDVNMNPLKRSSESSAQEDDADRQKRQ
KTECQEFIPRRYQLDVYEVAKARNTIAMLDTGAGKTMIAVMLMKDFRSKVDKSRNDRKVI
VFLAPTVQLVTQQCEVIRAHTDFEVELYYGAKGVDEWTAPRWKEEVSKYQVMVMTPMVLL
DALCKAFLTLDLVSLMIFDECHRATGNHPYSRIMKEFYHQSEHKPKVFGMTASPVIKKAV
SSVLDCEVQFSELEKLLNAKIYTVADREEIELCAPTAEYVNRYYAPKTVCFNYLNEELAL
LRSEYDALIRKLQNKPNYQKKEADEIAKQSRKHLSDSIEKILYCLDSVGLLCASEATKIC
IERSQRKGWLKKVSDATNIQSDTNSSFLCAEISALHLKFFDAVSRILDKHLQKGSNVLLN
SESGCVEATKMGYVSPKLYELIQIFYSFSNLDHFRCLIFVDRKITARVIERAMKKFSQLS
HFTVSFLTGGSSSVDALTPKVQKDTLDSFRSGKVNLLFSTDVAEEGIDIPDCSCVIKFDL
PTTTRSYIQSSGRARQKDSQYILMIERENAKQNNLVSAILRSKNSMVETALNRDSEDLLP
GFFAVQETNEYIVGTTGAKVTAESSIGVIVHCCNKLSKDKYNTTNPSFESMDHGDGFVCK
LTLPFSDVLPPLVGPKARSKQKAKQLVCLDACKQLHRRGILDDSLCPSFEKPPPGSDGVG
TTKRKELHGTTGVHALSGTWASERTAVKLQSYKLKFSCDQVGQRYSDFVLLIDTTIENEA
ANLDIDLYLHDKMVKASVSPYGLLELDVEQMEKAKLFQALMFNGLFGKLFTGSKLSDDPR
EFILNKSDAFIWKNANMYLILPMNLTLESHGISCINWRVINEAATAVKLLKKIYAEATMN
IPGILDCDQNDTDLIHLANTSCEAHVLRNVAVLAVHTGKIYTALHVADLSANSTFDGVSD
KKEAKFNTFTEYFENKYNIVLRHPSQPLLVLKPTHKPHNLLSSKFRDEGNREKKNDVINK
ANNRVHMPPELLIPLNLSEDILRSFYLFPSLMHRIETLMLASQLKSEISYEDSNISSFLI
LEAITSLRCSEDFSMERLELLGDSVLKYAASCHLFLKFPDKDEGELTSSRTDIISNAALY
GLGIEHKIQGYIRDAAFDPRRWLAPGQLSIHPVPCNCSLDEVVTHDIDAVDDKPIVKIGQ
MCDKGHRWMCSKTISDCVEAIIGAYYVGGGLRAALSVLKWLGVDADIEEELIIQTILNAS
MRTYLPKVDVIKMLEAKLGYAFSVKGLLLEALTHPSHQESAESYSYQRLEFLGDAVLDIL
LTRHLFNSHKDTDEGELTDLRCASVNNENFAQVAVKHKFHQFLQHSSGILPDQITEYAHS
LENSSLDKDKLLSDAALRGPKVLGDIVESIAGAVLIDTKLDLDVVWGVFKPLLSPIVTPE
NLELPPFRELLEWCSKNGYFVEIKCTVGEKIEATLGVQLKEKLLVRHGCGTNKKDSKAHA
ASMLLMDLQKEGLLIPKNASRTQHANGSNNLFDALDIRLPTPTSGKKSTGSKLAAILGKP
VHVLVKTSKGGPRAALYEVCKKLQWPVPSFDSVKVKPSCAKSMPHGFSFATTIALQIPSD
DKISLTGDGFADKKSAMDSAALLMLHELQRRGRLQVQEV
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctgggagcggcggccggaaggggaggcgacgacgcgatggacgccgccgcc
gggcctccgacggcggcggaggtggaggccgcccccgtccccgacgttaacatgaaccct
ctgaagaggtcgtcggagtcgtctgctcaggaagacgatgcagacaggcagaagcggcag
aagacagagtgtcaagaattcattccgaggagataccagctcgatgtctacgaggtcgcc
aaggcgcggaacacgatcgcgatgctcgacacgggagctgggaagacgatgatcgctgtg
atgctcatgaaggattttcggagcaaggtcgacaaatcgaggaacgacaggaaggtcatc
gttttcctcgcaccgacggttcagctcgtcacgcagcaatgcgaggtgattagagcccac
acggattttgaggtggagctctactatggcgccaagggggtcgacgaatggacggctcct
agatggaaagaagaagtgtcgaaatatcaggtcatggtgatgacaccaatggtgttgcta
gacgctttatgtaaagcgttcttgaccttggacttggttagtcttatgatatttgatgaa
tgccatcgtgcaactggcaatcatccgtattctagaataatgaaggagttttatcaccaa
tctgaacacaagccaaaggtgttcggtatgacagcatcacctgttataaaaaaagctgtc
tcttctgttttggattgtgaagttcagttctctgaactggaaaagcttctaaatgctaag
atctacacagttgctgatagagaagagatagagctttgtgcccctactgcagaatatgtg
aacagatactatgcccccaaaacagtttgtttcaactatttgaatgaagagttggcactt
ttacgttccgagtatgatgcattaattagaaaattgcagaataagccaaactaccagaaa
aaagaagccgatgaaatagcaaaacaatcacggaagcatctatcggattctatagaaaag
atcttgtattgccttgattctgttggtcttctttgtgctagtgaggccaccaaaatctgc
attgaaaggagtcagagaaaaggttggctgaagaaagtttctgatgccacaaatattcaa
agtgataccaatagctcgttcctgtgtgcggaaatttcagcactacatttgaagttcttt
gatgccgtgtcacgtatacttgacaaacacctccagaaaggtagcaatgtgcttctaaat
tctgagagtggatgtgtggaagcaacaaaaatgggctatgtatcaccaaagctttatgaa
ctcatccaaatcttctactctttcagtaacttagaccatttccgatgcctcatttttgtg
gaccgaaaaatcactgctagagtcattgaacgggcaatgaagaaattttcacagctctca
cattttacagtttcttttcttactggagggagttcttcagtggatgctctgacccctaaa
gtgcaaaaggacacactggattcatttcgttctggaaaggtgaacttactatttagtaca
gatgttgcagaagagggtattgatatcccagactgttcatgtgtaataaaatttgattta
ccgacgacaacccgtagctatattcagtcaagtgggcgagcacgccagaaggactctcag
tacatactaatgattgaacgggaaaatgcgaaacaaaataatttggtatcggccattttg
agaagcaagaactcgatggttgagactgctttgaacagagattccgaggatctactccct
ggtttcttcgccgttcaagaaacaaatgaatacattgtaggcacaacaggcgcaaaagta
actgccgagtctagtattggtgttatcgtccactgttgtaacaagctttcaaaggacaag
tacaacaccacaaacccttcatttgagtccatggatcacggtgatggttttgtgtgtaaa
ttaacactaccatttagcgatgtgttgccacctttggtgggtccaaaagcaagaagcaag
cagaaggcaaaacaactagtttgtcttgatgcatgtaagcagctgcatcgacggggaata
cttgatgactccctttgtccatcttttgaaaagccacctccaggaagtgatggtgtaggt
acaacaaaacgaaaggagctacatggcacaactggagtccatgccttgtctggtacctgg
gcatctgagagaactgctgttaagcttcaaagctataagttgaaattttcttgtgatcaa
gttggtcagagatactctgattttgttttgttaatcgacacaactatagaaaatgaagct
gcaaatttggatattgatctgtatctacatgacaagatggtaaaagcttcagtctctcct
tacggccttcttgagttggatgttgaacagatggagaaagcaaagctatttcaagcactt
atgttcaatggtttattcggaaagttgtttactggatcaaaattgtccgacgatccgagg
gagtttattctcaataaaagtgatgcatttatttggaaaaatgcaaatatgtatctgatt
ttacctatgaatcttactctggagtctcatggcatttcttgcattaactggagagtgatc
aatgaagctgctacagctgtcaaacttttgaaaaagatttatgctgaagccaccatgaac
ataccaggaattctcgattgcgaccaaaatgatacagatctaattcatttagctaacacg
tcatgtgaggctcatgtccttagaaatgtggcagtgctggcagttcacacagggaagatc
tatactgctcttcatgttgctgatttatctgccaatagcacatttgatggtgtatcagat
aagaaagaagcaaagttcaatacctttacagaatacttcgaaaataagtacaacatagtt
ctccgtcatccctcacagccattactagtgctaaaacccacccataaacctcacaacctt
ctttcctcaaagttcagagatgaaggtaaccgtgagaagaaaaatgatgtcattaataag
gcgaacaaccgtgttcacatgcccccagagttgctgattccccttaatttatctgaggac
attttaagatcattttatttgttcccctctttgatgcatcgtatagagacattaatgcta
gccagtcaactaaaaagtgaaatttcatatgaggattcaaatatatcaagctttctgatt
ctagaagctattacatcacttcgatgctctgaagacttctccatggagcgtctagaatta
ttgggagattctgtgctgaagtatgccgcgagttgtcaccttttcctgaaatttcctgat
aaggatgagggggaattaacatccagtaggactgatatcatatctaatgccgcactttat
gggcttggaattgaacacaaaattcagggttacatacgtgatgctgcatttgatcctcgc
cgatggcttgcaccaggacagctctcgattcaccctgttccttgtaattgctcgctagat
gaggttgtaactcatgatatcgatgccgttgatgacaaacctattgtgaaaataggccag
atgtgtgataagggacacagatggatgtgttccaaaacaatttcggactgtgttgaagcc
ataattggcgcatattatgtaggaggtggattaagggcagctctgtctgttctcaaatgg
ttgggtgttgatgctgacattgaagaagaattgattattcagaccatcttgaatgcatct
atgaggacttatcttccgaaagttgatgtaattaaaatgcttgaagcaaaactaggctat
gcattttcggtgaaaggtcttctgctagaagctcttacccacccatcacatcaggaatca
gcagaaagttactcctaccagcgtctggaattccttggcgatgctgtcttggatattcta
ttaacacgacatcttttcaatagtcataaagacaccgatgagggggagttgacagattta
cgctgtgcttcagtaaacaatgaaaattttgcacaagtcgcggtcaagcataagttccat
caatttctccagcattcttctgggattttaccagaccagattactgaatatgcacatagt
ttggaaaattcttccttggacaaagacaaactattatcagatgctgcattaagagggcct
aaagttctaggtgatattgtagaaagtattgcgggtgcagttcttatagatacgaaactt
gatttggatgtagtttggggtgtattcaagcctcttctttcacctattgtcacacctgag
aacctggagttgcctcctttcagagagcttctcgagtggtgcagcaaaaatgggtatttt
gtagaaattaagtgtacagttggagagaaaatagaggctactctgggtgtgcaactcaag
gagaagctccttgtcaggcatggttgcggcacgaacaaaaaggattctaaagcacatgca
gcttccatgttactcatggaccttcagaaagaaggacttctaatccccaagaatgcaagc
aggactcaacacgcaaatggcagtaacaacttgtttgatgcactggatatccggcttcca
acaccaaccagcggaaagaaatcaactggttcaaagttagctgctatccttggtaaacca
gtgcacgtgctggtgaaaacgagtaaaggaggacctcgtgcagcactgtatgaggtatgc
aaaaaattgcaatggccagtgccttcttttgattcggtgaaagtaaaaccaagctgtgca
aaatctatgcctcacgggttctcattcgctacaaccatagcattgcaaattcctagtgat
gataagatcagcctcacaggagacggtttcgcggacaagaaaagcgcaatggattctgct
gcactgctcatgctccacgagcttcagcggcgaggtagattgcaagtccaggaggtatga
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integrated database retrieval system