Lolium perenne (perennial ryegrass): 127345295
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Entry
127345295 CDS
T08650
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127345295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127345295
03009 Ribosome biogenesis [BR:
lper03009
]
127345295
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127345295
Spliceosome [BR:
lper03041
]
Complex A
U1 snRNP components
U1 related factors
127345295
Complex B
127345295
Ribosome biogenesis [BR:
lper03009
]
Eukaryotic type
Pre-60S particles
Helicases
127345295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
127345295
NCBI-ProteinID:
XP_051227706
LinkDB
All DBs
Position
3:complement(304142848..304147046)
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AA seq
568 aa
AA seq
DB search
MNPYADNRYADPSSYRDRRSDLAAAPVIAPQVPVGAANPYAAPYTPIAASAGGNFPRYGQ
GGGGGYGGGMGYGGGRGGGGGFHGGGGRGGGNGRDGLDSISLQKPDFRGLIPFEKSFYVE
CPEVQAMSETDVAQYRQLRDITVEGREVPKPIRFFHEANFPDYCMQAIAKSGFVEPTPIQ
AQGWPMALKGRDVIGIAETGSGKTLSYILPGLVHVGAQPRLEQGDGPIVLILAPTRELAV
QIQAEATKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIAIATPGRLIDMLEAGHTNLRR
VTYLVLDEADRMLDMGFEPQIRKILAQIRPDRQTLYWSATWPREVESLARQFLSNPYKVM
IGTAELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKECDKVTRQLRM
DGWPALSIHGDKAQSERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTIE
DYIHRIGRTGRAGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALESMSKSAGSMGG
GNNFRSRGRGGFGGNRSGSNNIPVRRRY
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgccgacaaccgctacgccgacccctcctcctaccgcgacaggcgcagc
gacctggccgcggctcccgtgatcgccccgcaggtccccgtgggcgccgcgaacccctac
gccgctccgtacacgcccatagccgcttccgctgggggcaacttcccgcgctatggccag
ggcggcggcggcggctacggtggaggcatgggctacggcggcggcagaggcggcggcggt
ggcttccacggcggcggtggtagaggaggcggcaacgggagggacggcctagactcgatc
tccctgcagaagccggatttccggggccttataccgttcgagaagagcttctacgtcgag
tgccccgaggtgcaggccatgtcggagacggatgtggcgcagtaccgccagctacgggat
atcaccgtggagggacgggaggtgcccaagcccatccgcttcttccacgaagccaacttc
ccagattactgcatgcaagcgatagctaagtcgggatttgtggagccaacgcctattcaa
gctcagggctggcccatggctttgaagggcagggacgtgattggcatcgcagaaactggc
tctgggaaaacactatcttacatactacctgggttggttcatgttggtgcacagcctcgg
ctagaacaaggtgatggcccaatcgtcttgatccttgctccgacaagggaactggctgtt
caaatacaggcagaagctacaaaatttggatcatactccagaactagaagcacatgtatc
tacggtggagcacctaagggaccacaaatacgtgatcttaggagaggagtggaaatcgcc
attgcaacacctggacggttgattgatatgctggaagctggtcacacaaacttgcgtagg
gttacataccttgtgctggatgaggcagaccgtatgctagatatgggcttcgagcctcag
attcggaaaatattggcacaaatccgtccggacaggcaaactttgtactggagtgccacg
tggccaagggaagttgaatccttggctagacaatttctttcaaacccttacaaggtaatg
ataggaacagctgaacttaaagctaatcattccatacaacaaattgtcgaagttatttca
gatcatgaaaagtatcccaggctgagtaagcttttatccgatctaatggatgggagccga
atattgatattttttcaaacgaaaaaggaatgtgataaggttactcgacaacttagaatg
gatggatggccagcgttatctatacatggtgataaagctcagtctgaaagggactatgtt
ctagccgagtttaagagtgggaagagtcctataatggctgccacagatgtagcagcacgt
ggtcttgacgtgaaggatataaagtgtgtgatcaattttgatttcccaaccactatcgag
gattatattcacaggataggccgaactggccgtgctggtgcaactggaatggcttttacg
ttcttcacacactcaaatgcaaagtattcgaggaatcttgtcaagatcttgcgtgaagct
ggccaggttgtaaatccagctctagaatctatgtccaagtctgccggttctatgggagga
ggaaacaatttccggtcaagggggcgtggcgggtttggtggtaaccgttctggatcaaat
aacatcccagtaaggagaagatattga
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