Lolium perenne (perennial ryegrass): 127347519
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Entry
127347519 CDS
T08650
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03022
Basal transcription factors
lper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127347519
09124 Replication and repair
03420 Nucleotide excision repair
127347519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127347519
03036 Chromosome and associated proteins [BR:
lper03036
]
127347519
03400 DNA repair and recombination proteins [BR:
lper03400
]
127347519
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127347519
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127347519
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127347519
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127347519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
127347519
NCBI-ProteinID:
XP_051229660
LinkDB
All DBs
Position
1:complement(40806147..40812233)
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLLYCTRTVHEMEKTLSELRLLFSHLPPAAARSLLALGLSSRKNLCVHPQAS
ASAARDSVDTACRRLTASWVREKAASDPESTPLCEYFETFDRAAAAGDLASFMPPGVYTL
ADLRSLGRERRICPYYLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRINQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPSLPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVSF
VASIHSQAGIDQRMLRFCYDRLQSLLLTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDDRMPNVRDPVIQLSCHDASLAIQPVFDRFQTVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWNDMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILRARLEYLRETFQIQEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHTA
REFLRRMAQPYDKAGSGGQKTLLTEEDLQDMGRDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgatctggatggcctgacggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggggagctgaagcgcgccctggacgcgcgcggccacgcgctgctg
gagatgccgacgggcacgggcaagacggcggcgctcatctccctcatcacctcctactcc
ctcgccaacccctcccgcccgctccgcctcctctactgcacccgcaccgtccacgagatg
gagaagaccctctccgagctccgcctcctcttctcccacctcccgcccgccgccgcgcgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gcctccgccgcgcgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtc
cgggagaaggccgcatccgacccggagtccaccccgctctgcgagtacttcgagacattc
gaccgcgccgctgccgccggcgacctcgcctccttcatgccgcccggggtctacaccctc
gccgacctccgctcgctcggccgcgagcgccggatatgcccctactacctcgccaggcag
atggtcaagtacgccaatgtggtggtctacagctaccaatatctgctcgaccccaaggtg
gccagcatcgtgtccagggagatgcagaaggagtgcgtggtcgtgttcgatgaggcgcac
aacatcgacaacgtctgcatcgaggcgctcagcgtcagcatccgcaagcagacgctcgaa
ggcgccgagcgaaacctgcggcgcatcaatcaagagattgataggttcaaggccaccgat
gccaataggctccgtgctgaatacaatcgacttgtggatggattggcacagaggggaaat
ctgccaatatcggatgcttggcttgcaaacccatccttgcctgatgacatcctgaaggag
gctgtgcctggaaacatcaggagggctgagcattttctcgctgtcctgcggagacttgtg
aggttcttagatggccgcctggaaacggagaatgttgagaacgagatgcctgtttccttt
gttgcttcaatacattcccaggctggaattgaccagagaatgctgaggttttgttatgac
cgcttacagtctctcttgcttaccttggagataaccgatacagatgaattcatgcacatc
cagaccatctgtgacttcgccacattgatcggaacttatacacggggattttctataata
attgaaccctatgatgatagaatgcctaacgttcgcgatcctgtgattcagctcagttgc
catgacgcttcactcgcaatacagcccgttttcgatcgtttccaaactgtcgtcatcact
tcaggaactctcagcccaatcgatctctaccctcgccttttaaattttaatcctgttata
agcaggagcttcacaatgtccttaacaagggattgcatatgccccatggtattgacacga
ggaagtgatcagctacccgtgagtacgaagtttgacatgcgcagtgatcctggtgtcgtg
aggaattatggccgcctcttgctggaaatggcttctgctgttccagatggcatagtctgt
ttctttgtcagttactcctatatggatggcattgtcaacagttggaacgacatgggaatt
ttacaggacattatgcaacacaagctggtattcattgaaacaccagatgttgttgagaca
acattggccctggataattacagaaaagcctgtgattgtggaagaggtgcagtcttcttc
tcagttgccaggggcaaagttgctgaaggtattgattttgatcgacactacggcagactt
gtgattatgttcggtgttccgttccagtacacactcagcaagatattgcgtgctaggttg
gagtatctaagagaaacttttcagatacaggagggtgatttcctgacatttgacgcattg
aggcaagctgctcaatgtgttggtcgtgtgatccgctcaaaagcagattatggaatgatg
atatttgctgacaaaagatacagtcggcatgacaaacggtccaaactgccggggtggata
ctgtcacacctgcacgatgcgcacctaaatctgagcaccgatatggctctgcatactgcc
cgtgagttcctccgcaggatggcccagccatacgacaaggctgggagcggcgggcagaag
accctcctgaccgaggaggacttgcaggacatgggtcgggacgccatggagatgtga
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