Lolium perenne (perennial ryegrass): 127349000
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Entry
127349000 CDS
T08650
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03022
Basal transcription factors
lper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127349000
09124 Replication and repair
03420 Nucleotide excision repair
127349000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127349000
03036 Chromosome and associated proteins [BR:
lper03036
]
127349000
03400 DNA repair and recombination proteins [BR:
lper03400
]
127349000
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127349000
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127349000
Chromosome and associated proteins [BR:
lper03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127349000
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127349000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
AAA_11
Nitrate_red_del
Motif
Other DBs
NCBI-GeneID:
127349000
NCBI-ProteinID:
XP_051230796
LinkDB
All DBs
Position
4:complement(300499451..300505871)
Genome browser
AA seq
753 aa
AA seq
DB search
MWFNLDGLPVCFPYAAIYPEQRAYMGELKRALDARGHAVLEMPTGTGKTAALLSLITSYA
LANPSRPLRLLYCTRTVHEMDKTLAQLRLLFSHLPDPSHLLALGLSSRKNLCVHPQVSAS
AAVDTGCRRLTASWVREKAASDTPLCDYFETFDTAAHRGDLASYISPGVYTLADLRSLGC
QRRICPYFLARHLVKHANVVVYTYQYLLDPKVASIVSPEMEMMMHKECVVVFDEAHNIDN
VCIEALSVTIRKQTLEGAQRNLRHISQEIDRFKATDANKLRAEYNRLVDGLAHSGHLPIS
DAWLANPALPHDILKEAVSGNIRRADHFLAALWRLVSFLDQRLETENVVNERPVSFADSI
YSLTVIDEEMLRFFYDRLQSLLITLEITDTDEFMHIQKICDFATLIGTYTRGFSIITEPY
DDRMPNIRDPVIQLSCHDASLAIQPVFNRFQTVVITSGTLSPIDLYPRLLNFTPVISRSF
TMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFVVS
YSYMDGIVSSWNDMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVAS
GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILSARLEYLRETFQIEEGDFLTFDALRQAA
QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILPHLHAAHLNLSTDMALHTAREFL
RRMAQPYDKAVSGQKTLLTEEDLQGMSQDDMEM
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtggttcaatctggatggccttccggtgtgcttcccgtacgcggcgatctacccggag
cagcgcgcgtacatgggggagctgaagcgcgccctggacgcgcgcggccacgcggtgctg
gagatgccgacgggcaccggtaagacggcggcgctcctctccctcatcacctcctacgcc
ctcgccaacccctcccgcccgctccgcctcctctactgcacccgcaccgtccacgagatg
gacaagaccctagcccagctccgcctcctcttctcccacctcccggacccgtcccacctc
ctcgcgctcggcctctcctcccgcaagaacctttgcgtccacccacaggtgtccgcatcc
gccgccgtcgacaccggctgcagacgcctcaccgcgtcctgggtccgcgagaaggccgcc
tccgacaccccgctctgcgactacttcgagacattcgacaccgcagctcacaggggcgac
ctcgcctcctacatttcacccggggtctacaccctcgctgacctccgctcgctcggctgc
cagcgccggatatgcccctacttccttgccaggcacctggtcaagcacgccaatgtggtg
gtctacacttaccagtacctgctcgaccccaaggtggccagcatcgtctccccggagatg
gagatgatgatgcacaaggagtgtgtggttgtgttcgatgaggcgcataacatcgacaac
gtctgcattgaggcgctcagcgtcaccatccgcaagcagacgctagaaggtgcccaacga
aacctgcggcacatctcgcaagagattgataggttcaaggccaccgatgccaataagctt
cgtgccgaatacaataggcttgtggatggattggcacacagcgggcatctgccaatatcg
gacgcctggcttgcaaatccagccttgcctcacgacattctcaaggaggccgtaagtgga
aatatcagaagggctgaccattttctcgctgccttgtggagacttgtgtcgttcttagat
caacggcttgagacagaaaatgtcgtgaatgaaagacctgtttcctttgctgattcaatc
tattccctcactgtaattgacgaggaaatgctgaggtttttttatgaccgcttacaatct
ctattgattaccctggagataaccgatacagatgaattcatgcacatccaaaaaatttgt
gacttcgccacactgatcggaacttatacacggggtttttctataataactgaaccctat
gatgatagaatgcctaatattcgtgatcctgtgattcagcttagttgccatgatgcttca
ctcgcaatacagcctgttttcaatcgttttcaaactgttgtcatcacttcaggaactctc
agcccaatcgatctgtatcctcgtcttttgaattttactcctgttataagcaggagcttc
acgatgtccttaacaagggattgcatatgtcccatggtattaacacgaggaagtgatcag
ctacctgtgagtaccaagttcgacatgcgcagtgatcctggtgttgtgaggaactatggg
cgcctcttgctagaaatggcttctgctgtgccagatgggatagtctgtttcgttgtcagt
tactcctacatggatggcattgtcagcagctggaacgacatgggaattttacaggacatc
atgcaacacaagttggtattcattgaaacaccagatgttgttgagacaacattggctctt
gataattacagaaaagcatgcgattgtggaagaggtgcagtcttcttctcagttgccagt
ggcaaagttgcggaaggtattgatttcgatcgacactatggaagacttgtgatcatgttt
ggtgttccattccagtacacactcagcaagatattgagtgctaggctggagtacctaaga
gaaacttttcagatagaggagggtgacttcttgacttttgatgcgttgaggcaagctgct
caatgtgtcggccgtgtgatccgttcgaaagcagattatggaatgatgatatttgctgac
aagagatacagtcggcatgataaacggtctaaactgccagggtggatactgccacacttg
cacgctgcacacctcaatctgagcaccgacatggctctgcatactgcccgtgagttcctc
cggaggatggcgcagccgtatgacaaggcagtgagcgggcagaagacgctcttgaccgag
gaggacctgcagggcatgtctcaggacgacatggagatgtga
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integrated database retrieval system
