Legionella pneumophila Lens (serogroup 1): lpl0091
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Entry
lpl0091 CDS
T00208
Symbol
rnr_lidP
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lpf
Legionella pneumophila Lens (serogroup 1)
Pathway
lpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lpl0091 (rnr_lidP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpf03019
]
lpl0091 (rnr_lidP)
03016 Transfer RNA biogenesis [BR:
lpf03016
]
lpl0091 (rnr_lidP)
Enzymes [BR:
lpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
lpl0091 (rnr_lidP)
Messenger RNA biogenesis [BR:
lpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lpl0091 (rnr_lidP)
Transfer RNA biogenesis [BR:
lpf03016
]
Prokaryotic type
tRNA degradation factors
lpl0091 (rnr_lidP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CAH14321
Pasteur:
lpl0091
UniProt:
Q5X0C9
LinkDB
All DBs
Position
107950..110130
Genome browser
AA seq
726 aa
AA seq
DB search
MSKKSKDPFYKREREKYAEPIPSREYIMEILDEYGRPMSRSKLFDKLDLSSESQQESLGF
RLKAMLRDGQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFFIPDDGSEDMVLSAKEMRA
VMHGDLVLAYQSGLDRRGRPEAKIHEVLEHANTTVVGRFFTDHGVNFVIPDSKRLTQDIS
IPQEFIGEAKNGQIVLVELIAYPNKRSQAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEW
PDDVLAEVGKIPQQISEEQLKGRTDLRNLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYV
AIADVSHYVAKDSALDQEAARRGNSVYFPGKVVPMLPEALSNGVCSLNPHVDRLCMVAEL
SITQEGKISRSRFYRAVIHSHARLTYTSVGAWLEQGKADEKHQALWPMLESLYDLYHVLL
DTRRLRGAMDFETTETRIEFDENKKIKCIVPVIRNDAHKLIEECMLAANVATARFLEKAE
IPTLYRVHAAPEEDKITALRQFLGELGLSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETV
MLRSLKQAQYVESNEGHFGLAYSAYTHFTSPIRRFPDLLIHRAIGHILDNHPIYEFEYSH
EDMNRLGKHSSMTERRADEATREVITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEI
YVEGLVHVTSLKNDYYTFDSAKHRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVE
DEVCNE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaaaatccaaagatcccttttataagagggaacgtgaaaaatacgccgagcca
attccaagccgggaatacatcatggaaatcctggatgaatacggtaggccaatgtctcgc
agtaaactgtttgataaattggatttgagctctgagagccagcaggaatctttgggtttt
cgcttgaaggccatgctgcgtgatggccaaatcatgcaggacaggcgtggacgcttttgt
ttattacaaaaaattaatttattgcgtggaacggttcaaggccatcctgatggttttgga
tttttcatcccggatgatggttctgaagatatggtgctctctgctaaagaaatgagggct
gtcatgcatggagatctggtgcttgcctatcaatctggattggatagaagaggaaggcca
gaagctaaaatccacgaagtcctggaacatgcgaataccacggttgtaggtcgatttttt
actgatcatggcgtgaattttgtcattcctgatagcaaacgtctgactcaggatatttca
attccccaagaattcattggcgaggccaaaaatggccaaatagtactggttgagttaatc
gcatatcctaacaagcgttcgcaagctataggcagagtaatccatattttgggtgagcat
atggctcctggtatggaaattcaggtagcaatccatgctcacggcattcctttcgaatgg
ccagatgatgttcttgcggaagtgggtaaaattccacaacagatttccgaggagcaatta
aaggggcgaaccgatttgcgtaatcttccttttgtaaccattgacggggaagatgcaaaa
gattttgatgatgctgtgtattgttacaaaaagccaaaaggcggcttccaattgtatgtc
gctatcgcagacgtcagtcattatgtggccaaagattctgctttggatcaagaagcagca
aggcgaggaaattcagtttattttcccggtaaagtggtgccaatgctacctgaagcctta
tccaatggcgtttgctcgttaaatccccatgttgaccgcttatgtatggtggctgagtta
tcgattacccaagaaggaaaaatatcccgatcccgcttttatcgggcagtgattcattct
catgctcgtttgacctacacgtcagttggggcatggttggaacaaggcaaggcagatgaa
aaacatcaagccttgtggcctatgcttgagtctctttatgatttatatcatgttctgctc
gatacccgtagacttagaggtgctatggatttcgagactacggaaactcgtatcgaattt
gatgaaaataagaaaataaaatgtatcgtgcctgtaatacgtaatgacgctcataaatta
attgaagaatgcatgctggcagcgaatgttgcaacagcaagatttttagaaaaagctgaa
attcctactttataccgagttcatgcggctcctgaagaggataaaattactgcattgagg
cagtttttaggagagctgggattgtcattgggaggggggagaaaacctggacccaaggat
tttcagcgtaccatgaacatgattggtgaccgaccagagaagcatcttattgaaacggta
atgctgcgttctttaaaacaagctcagtatgttgaatcgaatgaagggcattttggtttg
gcctattccgcttacacgcattttacatcaccaatcagaagatttcctgatctattaatt
cacagagcaatagggcatatactggataatcatcctatttatgagtttgaatatagccat
gaagatatgaatcgtttgggtaaacattcctcgatgacggagcgccgtgctgatgaggcg
acccgggaagtgattacctggttaaagtgcgagtatatgcaagacaaattggggcaggta
tttaagggtcgaatatccgctgtgaccagctttggtatttttgtggagcttgatgaaatt
tatgtagaaggcttggttcatgtcacttctttaaagaatgattattatacgtttgactct
gcaaaacatcgtttaataggggctcgcggcggtcaggtttatcgtttgggagataaaatg
actgtgttggtagctcgtgttgatttaaacgaacgtaaaatagattttgagcctgtcgag
gatgaagtttgtaatgaatga
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