Legionella pneumophila Lens (serogroup 1): lpl0983
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Entry
lpl0983 CDS
T00208
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpf
Legionella pneumophila Lens (serogroup 1)
Pathway
lpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lpl0983 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpf03400
]
lpl0983 (mfd)
Enzymes [BR:
lpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lpl0983 (mfd)
DNA repair and recombination proteins [BR:
lpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lpl0983 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAH15217
Pasteur:
lpl0983
UniProt:
Q5WXV7
LinkDB
All DBs
Position
complement(1104223..1107684)
Genome browser
AA seq
1153 aa
AA seq
DB search
MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFF
LNPNQNTQELLFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRL
SPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAREFPLNEQSQLHFRRAFRESFPG
NPSHCPIYEAISNNQFPSGIEYYLPLFFDKTVTFFDYLPANAKICLIEEIQENAERFWRE
LNERYEQRRHDVSRPILPPDNCFINPTELLTKANHYEQVRLYHKPSEKKGALNFNIAKAP
QLPIDRKNIEPLCQLSEYCSDPTRRYLIVVESAGRREVLLDLLKSSHIIPKTQNSWLDFI
YDESPINITTGPLIYGCELTDKQIVIIVESQLFGEQSTPQRRSTQKSVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAYAGDDKIYVPVTSLHMISRYTGVDS
EHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGF
PFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP
TTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNN
ISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAK
IQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQK
ISASAQQGKLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTSAEERIFEISS
LLNKLSPHSQTID
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacgctactttaccaacccacaaaaaataaacaaatatgggggcaactc
tatggtagcagcctggcacttgctttagctgaatattgccaacaaacacccggaatcaaa
ttacttattacgcaagacaacctatgcgccagtcagttgcaggatgaactacaatttttt
ctaaacccgaaccaaaatacccaggagttattattttttcccgactgggaaaccttgcct
tatgatcaattctctcctcatcaagatattatttcagaaagactttacaccttaagcaga
gttcaacaaattaccaatggaatcatcatttcttcagccagcactttaatgcacaggctt
tctcctccagagtttttaaatcaatacgctttaatgcttaaagaggggcaaaagcttgat
ctgaactcgttcaggaatcagttgcaacaagcaggataccattgtgttaataaagtgctt
gaacatggtgaatacgcactacgtggatctattattgacgtgtatccgatgggtagtggt
ttacctttccgtatcgagctatttgatgatgaaattgaaagtctcagagaatttgatccg
gaaacacaacgcacaatagaaaaaatcaatcaaatccatttgttacctgctcgtgaattt
ccattaaatgaacaaagccaattacatttccgacgagctttcagagagtcttttcctgga
aatcccagccattgcccaatatacgaagcaattagtaacaatcaatttccatctggcata
gaatattatctgcccttgttttttgataaaaccgttaccttttttgattatctgccagcc
aatgccaaaatttgtttaattgaagaaatccaggagaatgctgagagattctggcgagaa
ttaaatgaacgctatgaacaacggcgtcatgatgtcagccgccctattttacccccagat
aattgctttattaatcccaccgagttattaactaaagcaaaccattatgaacaagtacgc
ctgtatcacaaaccttccgaaaaaaaaggagccctaaatttcaatattgccaaagctcca
caactacccattgacaggaaaaatattgagccactctgccaattaagtgagtattgctct
gatccaactcgacgctatctaattgttgttgaaagcgcagggcgtcgcgaagtattactg
gatctgcttaaatcaagccatatcattccaaaaacacagaactcatggttagatttcatt
tacgatgaatcccccatcaatataactactggcccattgatttatggctgtgaattaacc
gacaaacaaattgtgatcatcgttgagtcgcaattatttggtgaacaaagcacacctcaa
cgccgaagtactcaaaaatcagttgaccctgacttaatcatacgagatatggccgaactt
cgattgggcgcccctgttgtacatcttcaatttggagtaggtcgctatcaaggtttgcaa
tacatcgactccaatggtacccccagtgagttcctcgtccttgcttacgcaggggatgac
aaaatctatgtgccagtcacttctctgcatatgataagccggtatactggtgtggacagt
gaacacgcccctttgcataaactgggttctgatcaatggcaaaaggaaaaaaagaaagcg
gccgagaagattcatgatgtggcaattgaattattggatctctatgctaaaagagaagcc
cagccagggcaccaatacgatttcaatcaatccgaatatataaaatttgccagtggcttc
ccctttacagaaacaccagatcaacttcaggctattgaacaaattattaaggacatgcaa
tcaccaagaccgatggatcgcctaatctgtggtgatgtaggatttggcaaaaccgaagtc
gccatgcgtgctgcattcgtagctgtacaaaatggaaaacaagtctgtatccttgctcca
actaccttgcttgcaggacaacattttgagtcatttcgcgatagattcgcagagtttcct
gttaatattgaattattatcccgctttcgcagtaataaagagtccgaagcagtccttgcc
gcattgcaatcaggtaaagtagatattgtaattggaacccataaattattccaaaataat
atttctttcaaaaacctgggattactgattattgatgaagaacatcgatttggagtgaaa
caaaaggaacatattaaatcgcttcgaactcatgttgatattttatccatgactgctact
ccaattcccagaacattgaacatggcaatggcgggaatcagagatatttcacttattgca
acaccgcctgccaagcgtttggcaattaaaacattttggcaagaaaaaaatgatctcacc
atacgagaagcgatattgcgtgaaatattaaggggagggcaggtattttacctgcacaac
aatgtacaaactatagaaagagtttgccaggatctggaagctttagtgcccgaggcaaaa
attcaaagcgcgcatgggcaaatgcgagaaaggcaattagagcgcatcatgtctgatttt
tatcatcaccgatttaatgtcctggtttgcacaaccatcattgaaacagggatcgatatt
ccaaccgccaataccattattatcgatcgtgccgataaatttggattagcccagctgcat
caattacgtggtcgtgttggacgctctcatcatcaagcctacgcttacttattaactccc
aatgaaaaactgttaacgccagatgcagtgaaacgtctcgaagccattgtgtctttagaa
gatttgggagcaggattcaccttggcaacacacgatctggaaattcgtggagcaggtgaa
ctccttggtgaagaacaaagtggtaatatgcatgccataggatttaatttatttatggaa
atgcttgaccgtgccgttaacgatttaaaggcaggcaaaactcctgaattgtcagcaccc
atgcatcaaggacctgaaattgacttgagaattagcgcgattatccccgaagattacata
ggtgatatacacaacagactcatcatgtataaaagaattgctaatgcaaaaactacccaa
cagcttagagaactacaaatagaactgatagaccggtttggtttactcccgcaaccagtc
aaacatctgtttttgattactgaattaaagttaaaagcggaacagctcggcatacaaaaa
atcagtgccagtgctcaacaaggtaaattggattttagtgaaaaaccatcaattgaccct
ggaacactgattagcttaatacaagtacatgccaaacgctatcaaatggaaggaccgcaa
cgtctgcgctttactttagacagcacgtcagcagaggaacgaatatttgaaatcagttct
ttattaaataaactgtctcctcattcccaaacgattgactga
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integrated database retrieval system
