Lactiplantibacillus pentosus: BB562_01390
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Entry
BB562_01390 CDS
T05251
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lpg
Lactiplantibacillus pentosus
Pathway
lpg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BB562_01390
09124 Replication and repair
03420 Nucleotide excision repair
BB562_01390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpg03021
]
BB562_01390
03036 Chromosome and associated proteins [BR:
lpg03036
]
BB562_01390
03400 DNA repair and recombination proteins [BR:
lpg03400
]
BB562_01390
Enzymes [BR:
lpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BB562_01390
Transcription machinery [BR:
lpg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BB562_01390
Chromosome and associated proteins [BR:
lpg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
BB562_01390
DNA repair and recombination proteins [BR:
lpg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BB562_01390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
ResIII
DEAD_2
DEAD
PDDEXK_1
PhoH
Motif
Other DBs
NCBI-ProteinID:
AUI77438
UniProt:
A0AB37RI94
LinkDB
All DBs
Position
complement(323975..326371)
Genome browser
AA seq
798 aa
AA seq
DB search
MATKIGIRQLVEFVLRQGDLNEVKNSQNTALNGAKIHRQLQSSRGEDYDSEVYLKQLVTM
NHTDYIIAGRADGIQLNDDGALIEEIKTSDQPFDELTDNTKTLYWGQLKVYGYLLLQEHP
ELDQVTGQLTYFQVINEKITKTQRILHRAELDAFFKDLITEYEYWLTLRADLREKRNQSI
QTLPFPFPAFRPGQHELAAAVYKTIRNQTRLFVEAPTGTGKTISTLFPAIKAMGEDVIER
LFYLTAKQSTRRVAEEAVTLMSHDGLKLKSITLTAKDQIRFPEEQDVLPEDNPFMLGYYD
RLKPALKDLLTHEDQITRTVIETYARKHTLDPFEFSLDTSLFCDVIICDYNYLFDPLVYL
QRFFSESDDENFFLVDEVHNLVSRSRDMYSAAVSDQPISTLLKLAKPDKSQPSDDLQREL
KKVRRSFTRLSKALIDDHLTEQVLPDPPDKLLRTLRTFNEFVTDWLAQQKPGPLLDAVRD
YFFACLTFVKIGDLYDGSYQTRYVLEGHHLTIKELCLDPSDFLNRSLELGGGAVLFSATL
TPMAYYQRVLGGEANSLAYQLPSPFPPKHQAILVTQYVQTTYHEREHNVPRIIASLHAML
AAKPGNYLVFFPSYGYLLQIKAAFEAAYPDVATTAQAAAMDASARQAFLDQFQADPTQTL
LGFCVLGGIFSEGIDLRGNRLIGVAIVSVGLPGINPETNLIRDYYDHQNGLGFAYAYQLP
GMNNVLQAAGRLIRSAHDTGIVLLLDQRFASRRYTELFPAHWQYYQTIGSVPQLEATIAN
FWHQMEVPHHEDKTNSPT
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcaactaagattgggattcgacaactggtagaattcgttttacgacaaggcgattta
aatgaagtcaaaaacagtcagaatactgcgctgaatggtgcgaagattcaccggcaactg
cagagtagccgtggtgaggactatgatagtgaagtttatttgaagcaactcgtcacgatg
aatcacaccgattacattattgccggacgagcggatggcattcaattaaacgatgacggc
gctctgattgaagaaatcaagacttccgaccaaccgtttgatgagctgacagataatacg
aagacactttattgggggcagctcaaggtctatggttatttattattgcaagaacatcct
gagcttgaccaggtaaccggccaactgacctattttcaagtcattaacgaaaaaatcacc
aaaactcagcgaatcctgcaccgtgcggaattagacgccttcttcaaggacctgattacc
gaatacgaatactggctgacgctgcgggctgatcttcgcgagaaacgcaaccaatcgatt
caaacgttgccgttcccctttccagcatttcggccggggcaacacgaactcgccgctgca
gtctacaagacgatccgtaaccaaacacgactcttcgtggaagcacccactgggactggc
aagacgatttccaccctgtttccagcgattaaggcgatgggcgaagacgtgatcgaacgc
ctattttacttgacggccaaacagagtacccgccgtgtcgcggaagaagcggttactttg
atgagtcatgacgggctcaagctgaaaagcatcacactgacagccaaagatcagattcgt
tttcccgaggaacaggacgtactccccgaagataacccattcatgctgggttattatgac
cggttaaagccagcgctcaaagacttattgacccatgaagaccagattacgcggaccgtc
atcgagacctatgcgcgcaagcataccttagacccgttcgaattctcactcgacacctca
ttattttgcgatgtcattatttgtgactacaattatctcttcgacccgctcgtctactta
caacgcttcttcagtgaaagtgacgacgagaatttcttccttgtcgacgaagtgcacaac
ctcgtcagccggtcgcgtgatatgtattccgcagccgttagtgaccaaccaatcagtacg
ctactgaagcttgccaagcccgataagagtcagccaagtgacgacctacaacgcgaactc
aaaaaagttcggcggagcttcacgcgtctcagcaaggccttaatcgacgaccatctgacc
gagcaagtcctgccagacccaccggacaaattgttgcgcacgctccgaactttcaacgag
tttgtcaccgactggctggctcagcagaaacccggacccttactagacgccgttcgcgat
tacttcttcgcctgcctgacctttgtcaagatcggtgacttatatgatggcagttatcag
acccgctacgtccttgaagggcatcatttgacgatcaaggagctctgcttagacccgagt
gacttcttgaaccgctcgttggaattaggcggtggtgccgtgctcttttcggcaacactg
acaccaatggcctattaccaacgcgtcttgggcggcgaggccaatagtttagcataccag
ttgccatcgccatttccgcccaagcaccaggcgattctcgtcacccagtacgtccaaacg
acctaccacgaacgcgagcacaacgttccccgcatcattgcgagtttgcacgcgatgctg
gctgccaagcctggtaactacctcgtcttcttcccatcctatggctacctcctgcaaatc
aaggcagcctttgaagcagcctatccagatgtggcgacgacagcccaggcagcggccatg
gatgccagtgcgcgccaggcctttttggaccaatttcaagccgaccccacccagacactg
ctggggttttgcgtactgggtggcatcttctctgaaggcatcgacttgcgtggcaaccgc
ttgattggcgtcgcaatcgtcagcgtcggtctgcctggcatcaatccagagaccaacttg
attcgcgactactatgaccatcaaaacgggctgggattcgcctatgcttaccagttaccc
ggcatgaacaacgtcttacaggcggctggtcgcctgattcgcagcgcgcacgacactggc
atcgtcctcttactagatcagcgttttgccagtcgccgctacacagaactctttccagcg
cactggcaatattaccaaacgattggctccgtcccacaacttgaagcaaccatcgccaat
ttttggcaccaaatggaggtcccacaccatgaagacaaaactaactcgccaacttga
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