Lactiplantibacillus pentosus: BB562_06915
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Entry
BB562_06915 CDS
T05251
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lpg
Lactiplantibacillus pentosus
Pathway
lpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB562_06915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpg03019
]
BB562_06915
Messenger RNA biogenesis [BR:
lpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BB562_06915
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AUI78428
UniProt:
A0AAP5UMW2
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All DBs
Position
1513179..1514903
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AA seq
574 aa
AA seq
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MSSKIQITPFGGVRENGKNMYAVEVDGDIYILDCGLKYPENELLGIDIVIPDFSYLRENA
DRIVGVFLTHGHADAIGALPYFLNEFNVPVFGSELTIELAKIQLQKDPQAKKFNDFHVVN
EKTEIDFGMVTVSFFRTTHSIPDSMGIVLQTSAGEIVYTGDFKFDPTAAGDYQTDFARLA
EIGSKGVLALLSDSANAENYEQPVSEREIAAYVLETFKYHPGRIIVASVASNILRIQQVL
DAAAKSDRKVALMPGDVESIVKTAIDLGKLHMPEDVVVPLKAIDKLKPEQVVILQTGRMG
EPIKALQRMANKQEGKVNIDKGDLVFITTTPSHSMETVVAKTRDMIYRADADVKAIADEM
NSSGHAAKRDLQLMINMMKPQYFIPIQGEYRLLDAHASFAREVGIPDDHVLIAAKGDQLR
YDGDTMHLAGSIEVGDTMIDGIGVGDIGNIVLRDRKILSEDGIFVAVVTIDRKKKKIIST
PKITSRGFVYVKTSKDLMQESAELVRTTVQENLDNKEFDWGHLKQAVREKLNHYLWDQTK
RHPVILPVIMEVNQHHRRSKKSKSNKPAERQPEA
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgagttcaaaaattcaaattaccccctttggtggggtccgtgaaaacggcaaaaacatg
tatgctgtcgaagtcgacggtgatatctatatcttggactgtgggctgaaatacccggaa
aatgaattgctcggaatcgatatcgttattccagatttcagttatttgcgggagaatgct
gatcgaatcgttggtgtgttcttaacgcacggccatgcggatgcaatcggtgctttacca
tactttttaaatgaatttaacgtgccagttttcggttcagaactaaccattgaattggct
aaaattcagttgcagaaggacccacaagctaagaagtttaacgattttcacgttgttaat
gagaagacggaaattgactttggtatggtcaccgtctcatttttccggacgacccattca
attccagactccatgggaatcgtactacaaacgagtgccggtgaaattgtctacacaggt
gactttaagtttgatccgacggctgccggtgactaccaaaccgactttgcgcgcttagcc
gaaatcggttcaaagggtgtcttggcattactcagtgattcagccaacgctgaaaactac
gaacaacccgtgagtgagcgtgagattgcggcctacgtcttggaaaccttcaaatatcat
cctggtcgaatcattgtggcatcggtcgcttcaaatatcttacggattcaacaagtgctt
gatgcggcagctaagtccgaccgtaaagtagccttaatgcctggtgatgttgaaagcatc
gtcaagacggccattgacttaggcaagctgcacatgcctgaagatgtcgttgtgccgtta
aaggccatcgacaagttgaagcctgaacaggtcgttatcttgcagactggccgcatgggt
gaacccatcaaagctttacagcggatggcgaacaagcaagagggtaaggtcaacattgac
aagggcgacctggtcttcattacgacgacaccttcccattcaatggaaacagtcgttgcc
aaaactcgtgatatgatttatcgcgctgacgcagacgtcaaagcaattgcggatgaaatg
aactcatcgggccatgctgctaagcgtgacttgcaattgatgatcaacatgatgaagcca
caatactttattccaattcagggtgaatatcggctgctagatgcgcacgcaagttttgcg
cgtgaagtcggaattcctgatgaccacgtcttaattgctgccaagggtgaccagttacgt
tatgatggcgacaccatgcatttagctggctcgattgaagttggagacaccatgattgat
ggtatcggcgtcggtgacattggtaacatcgtgttacgtgatcggaaaatcttatccgaa
gatggtatctttgtggcagtggttacaattgatcgtaagaagaaaaagattatttcgaca
cctaagattacctcacggggcttcgtctacgttaagactagtaaagatttgatgcaggaa
agcgccgaattggtacggacgacggtccaagaaaatcttgataacaaggaatttgattgg
ggccacttgaaacaagcggttcgcgaaaagttgaaccactacttgtgggatcagacaaaa
cgtcacccggtcattttaccagttatcatggaagtcaatcagcaccaccgtcgaagcaaa
aagtcaaaatcaaacaagccggctgaacgccaaccggaagcttaa
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