Lactiplantibacillus pentosus: BB562_14330
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Entry
BB562_14330 CDS
T05251
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpg
Lactiplantibacillus pentosus
Pathway
lpg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BB562_14330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpg03400
]
BB562_14330
Enzymes [BR:
lpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BB562_14330
DNA repair and recombination proteins [BR:
lpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BB562_14330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
SNF2-rel_dom
Cas3-like_C_2
AAA_22
MFD_D3
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AUI79762
LinkDB
All DBs
Position
complement(3120869..3124396)
Genome browser
AA seq
1175 aa
AA seq
DB search
MDIETIVEQTPDFQTILAAISPHSRQLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFH
ASQLVDDLTSLLDEDQVYLFPAEEMIATEVATSSPESRAQRVEALNALLSPQPAVVVTSV
AGARRFLPPVEQFKAATLSLAVGKDIDLEVLQHQLHEMGYVKEKLVARPGDYAVRGSIVD
IYPLDADYPLRLDFFDTEIDTLKYFDPETQRSVESLDAYTVLPATDFILTDDMMTAGAER
LKAAMATESKKLKPADRQTLADNLAQPLADMQKGIIGNDLLLYGDYLYDSKTSILDYVAE
NGLVIFEEYSRLLDNEQQLLTQEADWVTDQLSHHRVLATASYGNDIRDLLRDDAHAQLLI
SLFQKGIGNVRLAQVTNVRTRPMQEFFGQLPALKTELDRWHKLQQTVVLMVSEAERLTKV
SDTLDDFEIEAVMTKATNLQPGEVQIVQGSLQNGFEFPDGKLVIVTEQEMFKKVAKKRPR
RQTLANAERLKSYTDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAYQNNAKIFI
PVTQLNLVQKYVSSESKTPKINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY
AFPPDDSYQEDFDNDFPYPETPDQLRSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRA
AFKAIEAGKQVAFLVPTTILAQQHYETMLNRFEGYPINVGMLSRFRTSKEMKETVQQLKN
GELDIVVGTHRLLSKDVAFADLGLLIIDEEQRFGVKHKERLKSLKASVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPTNRYPIQTYVMAQNFGVIKEGIEREMQRNGQVFYLHNRVHD
IDKVVAQIKDLVSDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVN
TLFVENADRMGLSQLYQLRGRIGRSSRVAYAYFTYQQDKVLTEVGEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLSEAVAKKRGQATKVKTDATVEL
GIEAYLPTSYIEDERQKIEIYKRIRQLENNDQYLEVQDDLMDRFGDYPVEVAGLLAVGKL
KMLADDALIEKIQREDSDLQLTLSQQGTAKLDTKDIFKALAKTKLKATVGIDDDKMKVKL
VIQPKMQQDEWLEQLTQFVEQLSLILAEDDVASAS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggatattgagacgattgttgagcaaacgcccgactttcaaacgattttagcggcaatc
agtccgcacagtcgtcaattgattacaggattaaacggttcggcgagaacggtttattta
agtgcgctatttcatcaattaacgcattcattattgatcgtgactgacaacggttttcat
gccagtcagttagtggatgatttgaccagtctattagatgaagaccaagtctatctgttc
ccggcagaagagatgattgcgaccgaggtggcgactagttcaccagaatcacgggcacaa
cgggtcgaggcactcaacgccttactcagtccgcagccggcagtagttgtgacctccgtt
gcgggtgcccgccggtttttaccaccagtcgaacagttcaaagcagcgacgttatcctta
gcagttggcaaggatattgatctagaagtgctccaacatcaattacatgagatgggctac
gtcaaagaaaagctggtcgcacggccaggtgactatgcggtccggggctcaatcgtggac
atctacccgctcgacgcggattacccattgcggttagacttcttcgatactgagattgat
accttgaagtattttgacccggagacccaacgttcagtggaatcactcgatgcgtatacc
gtcttgccagcgaccgattttattttgaccgacgacatgatgacggccggggctgagcgg
ttaaaggccgcgatggcaacggagagcaagaagctcaaaccagctgatcgtcagacatta
gcggacaacttggcacaacccttggccgatatgcaaaaaggaattatcggcaatgatttg
ttattgtacggtgattatttatatgacagcaagaccagcattttagactacgtggctgaa
aacgggctggtgatttttgaagaatactcgcgactcctagataatgaacaacaacttttg
acccaagaagctgactgggtcaccgaccagctttcccatcatcgggtactggcaacggcc
agttacggcaatgacattcgggatttgttgcgggatgacgcccacgcgcaattactgatc
tcgctcttccaaaagggcatcgggaacgttcggttggcgcaagtgaccaacgtgcggact
cggccgatgcaagaattctttggtcaattgccggccttgaagactgaattggaccgctgg
cataagttacagcagacggtcgttttgatggtgtcggaagccgaacgcctgaccaaagtc
agtgataccctcgatgattttgaaatcgaggcggtgatgactaaggcgaccaacttgcaa
ccaggggaagtccagatcgttcagggcagcctgcagaacgggtttgagttcccggatggc
aaactggtgatcgtcactgaacaggaaatgttcaagaaagtcgctaagaagcggccgcgg
cgccagaccttggccaacgcggaacggctgaagagttataccgacttgaagccgggagac
tatgtcgtccacgtcaaccacgggattgggaagtacgtcggcatggaaacgctggaagtt
gacggcgtgcatcaggactacatcacgatcgcgtaccaaaataacgccaaaatctttatt
ccggtcacacaactgaacttggtccagaagtacgtctcatccgaatctaagacgcctaag
atcaacaagttaggcgggaccgagtggacgaaagccaagcgtaaagtcgcagccaagatt
gaggatattgcggatgaactcgtggacttgtatgccaaacgtgaagcggagaagggctat
gcctttccacccgatgacagttaccaagaagactttgacaatgattttccatatcctgaa
accccggaccaattgcggagtatcaacgaaatcaagcatgatatggaacggccgaaacca
atggaccgcttgctagttggtgacgttggttatgggaagacggaagttgccttgcgggcg
gcatttaaggcgattgaagccggcaagcaagtcgccttcctagtgccgaccacgattttg
gcccaacaacattacgaaacgatgcttaatcgctttgaaggttatccgatcaacgttggc
atgctgtcacgtttccggacttccaaggaaatgaaggagacggtccaacaactcaagaat
ggggagctagacatcgtcgtcgggacgcaccgtctgttatcaaaggacgtcgcgtttgcc
gacctcggtctactgattattgatgaggagcaacgatttggtgtgaagcataaggaacgg
ttgaaatcattgaaggccagtgtcgatgtgctgacattgaccgccacgccaattccacga
acgctgcacatgtcgatgctgggtgtgcgggacttgtcagtgattgagacgccaccaacg
aaccgttatccgattcagacgtacgtcatggcccagaactttggcgtcatcaaggaaggc
atcgagcgtgagatgcagcgtaatggtcaagtcttttacttgcataatcgcgtgcatgat
attgacaaagtcgtggcgcagattaaggatttagtgtcggatgccgccgtggcgcacatt
gacggccaaatgcccgagtcacagctggaagggattctctacgacttcattcgtggcgaa
tacgatgtgctcgtgacgacgaccatcatcgagaccggggtcgatattccaaatgtcaac
accttgtttgtggagaatgcggatcggatgggcttgtcacagctgtaccaattgcgggga
cggatcggccgtagtagtcgggtcgcatatgcttacttcacctatcaacaggacaaagtc
ttgacggaagtcggtgaaaaacggctacaagccatcaaggacttcacggaactaggttct
ggtttcaaaatcgcgatgcgcgacctctcgattcggggcgctgggaacttactaggtaag
caacagcacggtttcatcgactcagttgggtatgacctctatacacagatgctgtcggaa
gcggtggccaagaaacgcgggcaggctacgaaagtcaagacggatgcgaccgtcgaattg
ggcatcgaagcttacttgccaacgtcctatattgaagacgaacggcagaagattgagatt
tacaagcggattcggcagttggaaaacaacgatcagtacttggaagtccaggatgatttg
atggatcgctttggcgactatccggttgaagtagcgggactgttggcagtcggtaagctg
aaaatgttagccgatgatgcgctgattgaaaagattcaacgtgaagacagcgacttacag
ttgacgttgtcgcaacaaggtaccgctaagctagatactaaagatatttttaaggcctta
gcaaaaaccaaattaaaagcgacagttggaattgatgatgataaaatgaaggttaaatta
gtcattcaaccgaagatgcaacaggatgaatggctcgaacagttaacccagtttgtcgaa
cagctcagtttgatcttggcagaagacgacgtggccagtgcgtcctaa
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