Lactiplantibacillus pentosus: BB562_14455
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Entry
BB562_14455 CDS
T05251
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpg
Lactiplantibacillus pentosus
Pathway
lpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB562_14455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpg03019
]
BB562_14455
03009 Ribosome biogenesis [BR:
lpg03009
]
BB562_14455
Enzymes [BR:
lpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BB562_14455
Messenger RNA biogenesis [BR:
lpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BB562_14455
Ribosome biogenesis [BR:
lpg03009
]
Prokaryotic type
rRNA helicases
BB562_14455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
DUF6892
Motif
Other DBs
NCBI-ProteinID:
AUI79786
UniProt:
A0AAW8WJS3
LinkDB
All DBs
Position
complement(3155191..3156771)
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AA seq
526 aa
AA seq
DB search
MKFTELGLSDSLLKAVQRASYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL
QRLDFNNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP
QVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLF
SATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAA
RGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKLTKK
RMLPLKPPTESEAFAGQLAAAEADVDTLVAKTSTDKYATQAAELLQKYDATDLVAALLND
LTKDDASAVPVKITPERPLPRHKGGGNNRRGGYRGGNRGRNNSHGNGRGGYSHNGRNRDR
DRNGRGDRKSNGYKSRSRDDNRSNNRNHDDGRKQSSKRSYTIRTND
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttacagaactaggcttatccgatagcctacttaaagcagttcagcgggccagc
tacgaagaagcgaccccgattcaagccgaaaccattccaatggtgctagaaggcaaagat
gtgattggccaagcacaaaccggtactgggaagaccgccgcgtttgcattgccaatctta
caacgcttggattttaacaaccataacattcaagctttggtagtttcaccaacgcgtgaa
ttagccatccaaactcaggaagaaatcttccgtttaggtaaagacgaacgggccaaggtc
caagtcgtttacggtggtgctgatattcggcgccaaatcagaaatctgaaacaaaatcct
caagttatcgtagggacacctggtcgattacttgaccacattcgtcgtggaacggtcaaa
ttagaccacgtcaagatgttagttcttgacgaagctgacgaaatgttaaacatgggtttc
ttggaagacatcgaatcaatcatcaaacaagtgccggatgaacgtcaaacaatgctgttc
tccgcaacgatgccaccagaaatcaaacggattggtgtgcagttcatgaaggaaccgcac
cacgttaagatcaagtcgaaagaaatgactgccgacacggtcgatcaatattacgttaag
gccaaagaatttgaaaagttcgacatcatgactcggttattcgatgttcaggcaccggaa
ctcaccatcgtgtttggtcggaccaagcgccgggtcgacgaattatctaagggtcttgaa
gcacgtggttacaacgctgctgggattcatggtgatttaagtcaacaacggcggacgcaa
atcatgcgtcaattcaaggctggtaagttggatatcttagttgcgactgacgtggctgcc
cggggactagacgtttctggtgtgacccacgtgtacaactatgatattccacaagatcct
gacagttatgttcaccggattggccggactggccgggccggacataaaggggtctcattg
accttcgtcacaccaaacgaaatggaatatttgcgggtcatcgaaaagttgaccaagaag
cggatgttaccattgaagccaccaactgaatccgaagcttttgctggccaattggctgct
gctgaagcggacgttgatacgttggttgcgaagacttcaactgataagtacgccacacaa
gctgctgaactcttgcagaagtatgatgcaacggacttagttgcggccttgttaaatgat
ttgaccaaggacgatgcttctgccgttcctgttaagattaccccagaacggccattacct
cgtcataagggcggcggtaacaaccgtcgtggtggttatcgtggcggtaaccgtggccgg
aacaacagccatggcaacggccgtggtggctactcacacaatggtcgtaatcgcgatcgt
gaccgcaatggtcgtggcgatcgtaagagcaacggttacaagagtcgtagccgtgacgac
aaccggagcaacaaccggaatcatgatgatggtcgtaagcaaagcagtaagcggagctac
acgatccggactaatgattaa
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