Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1): LPV_0107
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Entry
LPV_0107 CDS
T02174
Symbol
rnr_lidP
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lph
Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1)
Pathway
lph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPV_0107 (rnr_lidP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lph03019
]
LPV_0107 (rnr_lidP)
03016 Transfer RNA biogenesis [BR:
lph03016
]
LPV_0107 (rnr_lidP)
Enzymes [BR:
lph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPV_0107 (rnr_lidP)
Messenger RNA biogenesis [BR:
lph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPV_0107 (rnr_lidP)
Transfer RNA biogenesis [BR:
lph03016
]
Prokaryotic type
tRNA degradation factors
LPV_0107 (rnr_lidP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
CCD07359
LinkDB
All DBs
Position
107445..109544
Genome browser
AA seq
699 aa
AA seq
DB search
MEILDEYGRPMSRSKLFDKLDLSSESQQESLGFRLKAMLRDGQIMQDRRGRFCLLQKINL
LRGTVQGHPDGFGFFIPDDGSEDMVLSAKEMRAVMHGDVVLAYQSGLDRRGRPEAKIHEV
LEHANTTVVGRFFTDHGVNFVIPDSKRLTQDISIPQEFIGEAKNGQIVLVELIAYPNKRS
QAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEWPDDVLAEVGKIPQQISEEQLKGRTDLR
NLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYVAIADVSHYVAKDSALDQEAARRGNSVY
FPGKVVPMLPEALSNGVCSLNPHVDRLCMVAELSITQEGKISRSRFYRAVIHSHARLTYT
SVGAWLEQGKADEKHQALWPMLESLYDLYHVLLDTRRLRGAMDFETTETRIEFDENKKIK
CIVPVIRNDAHKLIEECMLAANVATARFLEKAEIPTLYRVHAAPEEDKITALRQFLGELG
LSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETVMLRSLKQAQYVESNEGHFGLAYSAYTH
FTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSHEDMNRLGKHSSMTERRADEATREVITW
LKCEYMQDKLGQVFKGRISAVTSFGIFVELDEIYVEGLVHVTSLKNDYYTFDSAKHRLIG
ARGGQVYRLGDKMTVLVARVDLNERKIDFEPVEDEVCNE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcctggatgaatacggtaggccaatgtctcgcagtaaactgtttgataaattg
gatttgagctctgagagccagcaggagtccttgggttttcgcttgaaggctatgctgcgt
gatggccaaatcatgcaggacaggcgtggacgcttttgtttattacaaaaaattaattta
ttgcgtggaacggttcaaggccatcctgatggttttggatttttcatcccggatgatggt
tctgaggatatggtgctctctgctaaagaaatgagggctgtcatgcatggcgatgtggtg
cttgcctatcaatctggattggatagaagaggaagaccggaagctaaaatccacgaagtc
ctggaacatgcgaataccacggttgtaggtcgattttttactgatcatggcgtgaatttt
gtcattcctgatagcaaacgtctgactcaggatatttcaattccccaagaattcattggc
gaggccaaaaatggccaaatagtactggttgagttaatcgcatatcctaacaagcgttcg
caagctataggcagagtaatccatattttgggtgagcatatggctcctggcatggaaatt
caggtggcaatccatgcccatggcattcctttcgaatggccagatgatgttcttgcggaa
gtgggtaaaattccacaacaaatttccgaggaacaattaaagggtcgaaccgatttgcgt
aatcttccttttgtaaccattgacggggaagatgcaaaagattttgatgatgctgtgtat
tgttacaaaaagcccaaaggcggcttccaattgtatgtcgctatcgcagacgtcagtcat
tatgtggcgaaggattctgctttggatcaagaagcagcaaggcgaggaaattcagtttat
tttcccggtaaagtggtgccaatgctaccagaagctttatccaatggcgtttgctcatta
aatccccatgttgatcgcttatgtatggtggctgagttatcgattacccaagaaggaaaa
atatcccgatcccgcttttatcgggcagtgattcattctcatgctcgtttgacctacacg
tcagttggggcatggttggaacaaggcaaggcagatgaaaaacatcaagccttgtggcct
atgcttgagtctctttatgatttatatcatgttctgctcgatacccgtagacttagaggt
gctatggatttcgagactacggaaactcgtatcgaatttgatgaaaataagaaaataaaa
tgtatcgtgcctgtaatacgtaatgacgctcataaattaattgaggaatgcatgctggca
gcgaatgttgcaacagcaagatttttagaaaaggctgaaattcctactttataccgagtt
catgcggctcctgaagaggataaaattactgcattgaggcagtttttaggggagctggga
ttgtcattgggagggggtagaaaacctggacccaaggattttcagcgtaccatgaacatg
attggtgaccgaccagagaagcatcttattgaaacggtaatgctgcgttctttaaaacag
gctcagtacgttgaatcgaatgaaggtcattttggtttggcctattccgcttacacgcat
tttacatcaccaatcagaagatttcctgatctattaattcacagagcaatagggcattta
ctggataatcatcctgtttatgaatttgagtatagccatgaagatatgaatcgtttgggt
aaacattcctcgatgacggagcgccgtgctgatgaagcgacccgggaagtgattacctgg
ctaaaatgcgagtatatgcaagacaaattggggcaggtatttaagggtcgaatatccgct
gtgaccagctttggtatttttgtggagcttgatgaaatttatgtggaaggcttggttcac
gtcacttctttaaaaaacgattattatacgtttgactctgcaaaacatcgtttaataggg
gctcgcggcggtcaagtttatcgtttgggagataaaatgactgtgctggtagctcgtgtt
gatttaaacgaacgtaaaatagattttgagcctgtcgaggatgaagtttgtaatgaatga
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