Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1): LPV_0412
Help
Entry
LPV_0412 CDS
T02174
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lph
Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1)
Pathway
lph03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lph00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPV_0412 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lph03021
]
LPV_0412 (rpoB)
03400 DNA repair and recombination proteins [BR:
lph03400
]
LPV_0412 (rpoB)
Enzymes [BR:
lph01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPV_0412 (rpoB)
Transcription machinery [BR:
lph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPV_0412 (rpoB)
DNA repair and recombination proteins [BR:
lph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPV_0412 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
DUF6497
Motif
Other DBs
NCBI-ProteinID:
CCD07643
LinkDB
All DBs
Position
424390..428496
Genome browser
AA seq
1368 aa
AA seq
DB search
MAVAEAKPQYSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGL
HAAFSSVFPIESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDA
SDDPKPIKDIREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSS
GKLLYSARIIPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFET
TRCHLKNGEYHIDLIPQRLRGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDL
VVPRDYLIGKTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGS
YISDTLKIDPTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKF
NRRVGIKSDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFR
VGLVRVERAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVT
HKRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYG
FIETPCRKVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLT
TPDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGME
RIVASDSGVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCI
NQRPIVSTGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHD
DRFTTIHIEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVG
KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARA
KSIEEEHLARVRKDLIDERRIREEDIYHRVSHLLLDRVATGGPGSLKPGSKITQDYLDKV
EREKWFDIRIEDDAISQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKV
YLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQV
LETHLGLAAKGLGRKIAQMLDEKQTPEAIKAYLEKIYNHDGVQRVNLKCLNDDELMTLAD
NLRAGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLK
LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEHD
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcagaagctaaacctcaatattcgcatgctgagaaaaaacgatttcgcaaa
agctttggtaagcagacagatataatgccaataccgaatctgcttgaaattcaacttaaa
tcctacagggattttcttcaaactgatactaaattaagcgaacaactgaatacgggattg
catgctgcattttcttctgtatttcctatcgaaagcttttctggtaatgcaagacttgaa
tacgtcggatacaagcttggagagcctgcatttgatgttcgcgaatgcaaactaagaggg
ctgacttactcagctcctctaagagtcaagatcagactcgttgtgcttgataaagacgca
agcgatgatcctaaacctataaaggatattagagagcaagatgtttttatgggggaaatt
cctctaatgaccgacgttggtacgtttgtggtcaatggaactgaacgtgttgttgtatca
caattacatcgttcgcctggggttatatttgaacatgacaagggaaaaactcactcttca
ggtaaattgctctattccgcacgaataataccttatcgtggttcatggttggattttgaa
ttcgatcctaaagattgcgtttatgtacgtattgacagacgtcgcaaactgccagtgact
attttgctcagagcattgggctacgaagcagaagatatcttaagcgaattttttgaaaca
actcgttgtcatttaaaaaatggcgaataccacatcgatttaattccacagcgtttgcgt
ggtgaaatcgcttcattcgatattcatgttcctgagacaggagagcttatcgtagaacaa
ggtcgtcgaattaccgcaagacatataaagcaaatggaaaaaagccaaatgcaggatctt
gtggtgccaagagactatttaattggaaaaacattagcaaaaaatattattgatacctca
accggtgaatttctggctcaagcgaatgatgagataacggaagagcttttagatgctatg
gctaaccatggtattttacaaattgatatgatctatactaatgatttggatcatggttct
tacatatcggatacattaaaaattgatcccacaggatcacaactagaagcactcgttgaa
atttaccgcatgatgcgccctggagagcctcctacaaaagaagctgctgaggcactgttc
aaaaatctattctttgttgaagaaagatatgatctatctgctgttggcagaatgaaattt
aatcgtcgcgtaggaattaagagtgacgaaggcccaggcactttaacgaaagaagacatt
ttatctgtcattaaaacactgatagatattcgaaacggtatagggatggttgatgatatc
gatcacctaggaaatcgtagggtaagaagtgttggtgaaatgaccgaaaatcagtttaga
gtaggtcttgttcgtgttgaacgtgctgttaaagagcgtttaagtttggttgaatctgaa
aatctgatgccacaggacttaattaacgcaaaaccagtatccgccgcaattaaagagttt
tttggatccagtcagttatcacagtttatggatcaagtgaatccattatctggtgttacg
cataaaagacgtgtatcggctcttgggccaggtggtttaacacgtgagagggctggattt
gaagtccgtgacgtacatacaactcactatggtcgtgtgtgtccaattgaaacgcctgaa
ggaccaaatattggtctaatcaattcactgtcagtttatgcaagaactaacgaatatgga
tttattgaaactccttgtcgaaaggtcgttaatgggcgtgtgacagatgaagttgaatac
ctatcggctattgaggaagttgatcaatacattgcacaatccaatgttgagttagacgca
caaggaaatattcttgctgacctagttccttgcagacatcaaaatgaattttcactgact
acccctgataaaattaactacatggatgtctcgcccaagcaaattgtgtcagttgctgct
tcattgattccgtttttagagcacgatgacgcaaacagagcattaatgggttcaaacatg
caacgacaggctgtaccaaccttgcgttcagaaaagcccttggttgggaccggtatggaa
agaatcgttgcatctgattcaggggtttcagttgttgcgaagagaggtggagttattgat
ctggttgatgcttctcgtattgttgttcgagtgaatgacgacgaaacaacagcaggggaa
accggggtagatatttataacttaaccaagtatttccgttctaaccaggatacttgtatc
aatcaaagacccatagtatcaacaggtgatcgaattcaacgaggtgatgtcctggctgac
ggtccatgtacagatatgggtgaattggctcttggacagaatctattggtagcgtttatg
ccttggaatggttataactttgaggattccattcttatatctgaacgaatcgttcatgat
gacagattcactactattcacatcgaagagttaacatgtatagctcgagataccaaatta
ggtacagaagaaattacagcagatattccgaatgtaggcgagtctgcactctccaatttg
gatgaatctggagttgtttacatcggtgcagaagtaaaagcaggcgatattcttgtgggt
aaagtaactcctaaaggagaaacccaactaaccccagaagaaaaactgttaagagctatc
tttggtgaaaaagcttcagatgttaaagattcatctttgagagttccatcaggtatgaat
ggaacagtgatcgatgtacaagtctttacccgtgatggacttgaaaaggatgcccgcgct
aaaagcattgaagaagagcatctagctcgagttcgcaaggatttaatagacgaacgacgt
attcgtgaagaagacatctatcatagagtttctcatttgctgttggatagggtggcaaca
ggcggtcctggaagcttaaagccaggatctaaaatcacccaggattacttagataaggtt
gaaagagaaaagtggtttgatattcgtatagaagatgacgcaattagtcagcaactagaa
caattatccaagcagctggaacttttaacaaaagaaatggaaaagcgctttaacgacagt
agaaagaaaattatccagggagacgatttagcacctggtgtattaaaaattgttaaagtg
tatttggctgttaaaagaagaattcagcctggagacaaaatggcaggtcgtcatggaaac
aagggtgtgatctccattgttgttccagttgaagatatgccacatatggaagatggaacg
gctgtagatatcgttcttaatccattgggcgtaccatcgcgaatgaatatcggccaggtt
cttgaaacgcatctaggactagctgccaaaggattaggaagaaaaattgcacagatgctt
gatgaaaaacaaacacctgaagcaataaaagcatatcttgagaaaatttataatcatgac
ggagtgcagcgcgttaatttgaaatgcctcaatgatgatgaattgatgacactggctgat
aacctgagagctggtgtgccgatggcaactcccgtctttgatggtgctactgagcaagaa
atcaaaagtatgttgcagttagcagatttgccagcagatggtaaaaccgtgttgatagat
ggccgaacaggtaataaatttgataatccggttactgtaggctacatgtatatgttgaag
ttaaaccatttggttgatgacaagatgcatgctcgttcaactggatcatacagtttggtc
actcaacaaccacttggcggtaaagcacaatttggtggtcagcgttttggtgagatggaa
gtatgggcattagaagcatatggtgcagcatacactttacaagaaatgttaaccgtaaaa
tcagatgacgtcggaggtcgaacaaagatctataaaaatatagtcgatggagatcatcgt
atggacccaggaatgcctgaatccttcaatgtattattgaaggaaattagagcactggga
attgatatcgagttggagcatgactaa
DBGET
integrated database retrieval system
