Lytechinus pictus (painted urchin): 129253817
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Entry
129253817 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129253817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129253817
03041 Spliceosome [BR:
lpic03041
]
129253817
03036 Chromosome and associated proteins [BR:
lpic03036
]
129253817
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129253817
Spliceosome [BR:
lpic03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129253817
Complex B
129253817
Complex C
U2 SnRNP specific factors
129253817
Chromosome and associated proteins [BR:
lpic03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
129253817
TFTC complex
129253817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
129253817
NCBI-ProteinID:
XP_054748217
LinkDB
All DBs
Position
2:complement(8118955..8151605)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYALTLQRATGIVQCIHGNFAGTKQQELVVGRGKLLELIKIDPNTGKLYTVLSHEIFG
IIRTLMPFRLTGGSKDFIVVGSDSGRIIILEYNAAKNCLERVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMVGALEKQKLVYILNRDAQARLTISSPLEAHKSNTFSFHIVGVDVGFENP
MFACLEIDYEDADSDPTGEAALATQQLLTYYELDLGLNHVVRKYSRXLEEYETFTYCSTG
GSDGPSGVLICSXNYITYIFHTDQPDIRXAIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDDDMVTEIRMKYFDTVPVATSMNVLKTGFLFIASEYGNHYLYQ
IAHLGDDDDEPEFSSATPLEEGDTFFFAPRTLRNLEEVDQLESLSPILACQIADLASEDT
PQLYVACGRGPRSSMRVLRHGLEVSEMAVSELPGNPNAVWTVKKKSDDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSSSLIGDDALLQIYPDGIRHIRADKRVNEWKTPG
KKSIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKEMNVDVKCMSLATVPSGEQ
RARFLAVGLDDNTVRIISLDQSDCLQPLSMQALPAPAEALCIIEMGGTEAREDTGERGSS
GGLFLNIGLQNGVLLRMVLDSVTGDLSDTRTRYLGSRPVKLFRINMQGSEAVLAMSSRSW
LSYWYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSTQ
LKFTPRKFATHLENNNIVVIESDHNTYTDSTKAQRKQQMAEEMVEAAGEEEKELAAEMAE
AFIQEELPESTFSSPKAGSGMWASTIRLLNPVQGQTLDMVELEQNEAAFSLAVVKFANRE
DETHVLVGTAKDVTLSPRTCSGGAIHTYLLTEEGKKLEFLHKTLVDDVPSAIASFQGRVL
IGIGRLLRIYDLGKKKLLRKCENKHIPNFITNIMTTGNRIIVSDVQESLHFLKYKRQENQ
MVIFADDSNPRWITATCLLDHDTVMCTDKFGNITVLRLPTSINDNVDEDPTGVKALWDRG
LLNGASQKTDVVSSFFIGETVLSLQKATLIPGGSESVVYTTLSGAIGVLVPFTSHEDHDF
FQHLEMHMRSEYAPLCGRDHLSYRSYYYPVKNVIDGDLCEQYNSMDLSKQRTVAEELDRN
PSEVSKKLEDIRTRFAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctatgcactaactcttcagcgagccacaggcatcgtccagtgcatacatgga
aactttgctggcaccaagcagcaagagttggtggtcggacggggtaaactcctggagttg
atcaagatagatcccaacactggcaagctctacactgtactgagtcatgagatatttggg
atcatcaggacattaatgcctttcaggctaacaggaggaagtaaagatttcatagttgtt
ggatcagactctggacgtatcatcatccttgaatacaatgctgctaaaaactgccttgaa
cgggtccatcaagagacatttggtaaaagtgggtgtcggcgtattgtacccggtcagttc
ctggctgtagaccctaagggccgtgccgtcatggtgggtgcgttggagaaacagaagctt
gtatacatcctgaacagagatgcacaggctaggctgaccatctcatcccctttggaagcc
cacaaatcaaataccttctcattccacattgtaggggttgatgttggctttgagaacccc
atgtttgcctgcttggagattgactatgaagatgctgatagtgatccaacaggggaagcg
gccctggcaacccaacaactacttacctattatgaactggacctggggctaaaccatgtg
gttaggaaatacagtagancattggaggaatatgaaacttttacttattgcagtaccgga
ggaagtgatggtcctagtggtgtattgatctgttctnagaactacatcacttacattttt
catacagatcaaccagatatcaggnatgcgataccacgaaggaggaatgacttggatgat
cctgaaaggggtatgatatttgtttgcagtgcaacccacaaaacaaagtccatgtttttc
ttcctggcccaaactgagcaaggtgatatcttcaagatcacgttagagacagatgacgac
atggtgacagagatacgcatgaagtactttgacactgttccagttgcaacttccatgaat
gtcctaaagacaggcttcctcttcattgcatcagagtatggcaatcactacctgtatcag
attgcccatcttggagacgacgatgatgagcctgaattcagcagtgctacaccccttgag
gaaggggatacctttttctttgcacctcgtaccctcagaaaccttgaagaggtggaccag
ttggaaagcctttctcctattctcgcttgtcagattgcagacttagccagtgaagacact
cctcagctctatgtagcgtgtggtagaggacctaggtcatccatgagagttttaaggcat
ggattagaggtatctgaaatggctgtatcagagcttcctggtaaccccaatgctgtatgg
actgtcaagaagaaatcagatgatgagtatgatgcttacatcattgtgtctttcgtcaat
gccaccctggtcctctccatcggtgagactgtagaagaagtgacagattctggtttcttg
ggtaccacgccgaccctctcatcatcacttataggagatgatgcactcttacagatctac
ccagatggtatacgtcacatccgtgcagacaagcgtgttaatgaatggaagacccccggt
aagaagtccattgttaagtgtgctgttaaccagagacaggtagtcattgcactgacaggt
ggagaacttgtctactttgaaatggatccaacaggacagctgaatgaatacactgagagg
aaggagatgaatgttgatgtgaagtgcatgagccttgccacggtgccctcgggtgaacaa
cgagcaaggttcttagctgtaggtcttgatgacaacaccgtacgcatcatctcactagac
caatcagactgtcttcaacctctgagtatgcaagcactaccagcccctgcagaagctcta
tgtatcattgagatgggaggtactgaagccagggaagatactggtgagaggggtagctca
gggggcctcttcctcaacattggtctccagaatggtgtattactaaggatggtattagac
tcggtgactggagatctttctgatacaagaacaagatacctcggttcaagaccagtcaaa
ctcttcaggattaacatgcaaggatcagaagctgtgcttgctatgtctagtcgatcttgg
ttgagttactggtaccagtctcggtttcatctcacaccactgtcgtacgaaaccttggag
tttgcatctggattcgcctcagagcagtgtcctgaaggaatcgttgccatctccacaaac
acgcttaggatcttggctttggagaagcttggagctgtgtttaaccaggtatcaacgcaa
ctgaaattcacgcctagaaagtttgccactcaccttgagaataacaacattgttgtgata
gaatcagatcataatacgtacacagattctactaaagcacagaggaaacaacagatggct
gaggaaatggttgaagcagcaggagaggaagagaaggagctagcagctgagatggctgaa
gcttttatccaagaggagttgccggagtctaccttcagctcccctaaggctggatcaggg
atgtgggcatctacgatcaggcttcttaacccggtacaaggacagactctagatatggtg
gagttagaacagaatgaagcagcattcagtcttgcagtagtgaaatttgccaatcgtgag
gatgagactcatgtcttagtagggacagctaaagatgtgacgttgagtcccaggacctgc
tctggaggtgctatacatacatacctactcacagaagaaggaaagaaactggaattttta
cacaagactcttgtggacgatgtaccatcagctatcgcttcattccaaggaagggtcctc
atcggaataggaagacttctcaggatatatgatctgggcaagaagaaactactcagaaaa
tgtgaaaataagcacattccaaacttcatcacaaacatcatgacgacaggtaaccgtatc
atcgtgagtgatgttcaggagagtctccattttctcaagtataagaggcaagagaatcag
atggttatctttgctgatgatagtaaccctcgatggataacggccacgtgcctccttgac
catgatacagtcatgtgtactgataagtttggaaacatcactgtgctgaggttacctaca
agcatcaatgacaacgtagatgaagacccgacaggggtgaaggcactctgggatcgtggt
ttgctaaacggagcatcccagaagactgacgtcgtctctagtttcttcattggtgagaca
gtcctgtcgttacagaaagctacgctcattcctggaggatcagaatctgttgtctatacc
actctatctggagccattggtgttctggtaccattcacctcacacgaggatcatgatttc
tttcagcatcttgaaatgcacatgagatcagagtatgcaccactttgtggaagagaccat
ctctcgtacagatcatactactatcctgtcaagaacgtgattgatggtgatctgtgtgaa
cagtacaattctatggatctatccaagcagaggactgttgctgaagaactagataggaat
cctagtgaggtttcgaaaaagctggaagacatcagaacgagatttgccttttaa
DBGET
integrated database retrieval system
