Lytechinus pictus (painted urchin): 129253819
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Entry
129253819 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129253819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129253819
03041 Spliceosome [BR:
lpic03041
]
129253819
03036 Chromosome and associated proteins [BR:
lpic03036
]
129253819
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129253819
Spliceosome [BR:
lpic03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129253819
Complex B
129253819
Complex C
U2 SnRNP specific factors
129253819
Chromosome and associated proteins [BR:
lpic03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
129253819
TFTC complex
129253819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
129253819
NCBI-ProteinID:
XP_054748221
LinkDB
All DBs
Position
2:8257981..8290471
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYALTLQRATGIVQCIHGNFAGTKQQELVVGRGKLLELIKIDPNTGKLYTVLSHEIFG
IIRTLMPFRLTGGSKDFIVVGSDSGRIIILEYNAAKNCLERVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMVGALEKQKLVYILNRDAQARLTISSPLEAHKSNTFSFHIVGVDVGFENP
MFACLEIDYEDADSDPTGEAALATQQLLTYYELDLGLNHVVRKYSEPLEEYGNLLIAVPG
GSDGPSGVLICSENYITYKNLGDQPDIRMPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDDDMVTEIRMKYFDTVPVATSMNVLKTGFLFIASEYGNHYLYQ
IAHLGDDDDEPEFSSATPLEEGDTFFFAPRTLRNLEEVDQLESLSPILACQIADLASEDT
PQLYVACGRGPRSSMRVLRHGLEVSEMAVSELPGNPNAVWTVKKKSDDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSSSLIGDDALLQIYPDGIRHIRADKRVNEWKTPG
KKSIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKEMNVDVKCMSLATVPSGEQ
RARFLAVGLDDNTVRIISLDQSDCLQPLSMQALPAPAEALCIIEMGGTEAREDTGERGSS
GGLFLNIGLQNGVLLRMVLDSVTGDLSDTRTRYLGSRPVKLFRINMQGSEAVLAMSSRSW
LSYWYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSTQ
LKFTPRKFATHLENNNIVVIESDHNTYTDSTKAQRKQQMAEEMVEAAGEEEKELAAEMAE
AFIQEELPESTFSSPKAGSGMWASTIRLLNPVQGQTLDMVELEQNEAAFSLAVVKFANRE
DETHVLVGTAKDVTLSPRTCSGGAIHTYLLTEEGKKLEFLHKTLVDDVPSAIASFQGRVL
IGIGRLLRIYDLGKKKLLRKCENKHIPNFITNIMTTGNRIIVSDVQESLHFLKYKRQENQ
MVIFADDSNPRWITATCLLDHDTVMCTDKFGNITVLRLPTSINDNVDEDPTGVKALWDRG
LLNGASQKTDVVSSFFIGETVLSLQKATLIPGGSESVVYTTLSGAIGVLVPFTSHEDHDF
FQHLEMHMRSEYAPLCGRDHLSYRSYYYPVKNVIDGDLCEQYNSMDLSKQRTVAEELDRN
PSEVSKKLEDIRTRFAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctatgcactaactcttcagcgagccacaggcatcgtccagtgcatacatgga
aactttgctggcaccaagcagcaagagttggtggttggacggggtaaactcctggagttg
atcaagatagatcccaacactggcaagctctacactgtactgagtcatgagatatttggg
atcatcaggacattaatgcctttcaggctaacaggaggaagtaaagatttcatagttgtt
ggatcagactctggacgtatcatcattcttgaatacaatgctgctaaaaactgccttgaa
cgggtccatcaagagacatttggtaaaagtgggtgtcggcgtattgtacctggtcagttc
ctggctgtagaccctaagggccgtgccgtcatggtgggtgcgttggagaaacagaagctt
gtatacatcctgaacagagatgcacaggctaggctgaccatctcatcccctttggaagcc
cacaaatcaaataccttctcattccacattgtaggggttgatgttggctttgagaacccc
atgtttgcctgcttggagattgactatgaagatgctgatagtgatcctacaggggaagcg
gccctggcaacccaacaactacttacctattatgaactggacctggggctaaaccatgtg
gttaggaaatacagtgaaccattggaggaatatggaaacttacttattgcagtacccgga
ggaagtgatggtcctagtggtgtattgatctgttccgagaactacatcacttacaagaac
ttgggagatcaaccagatatcaggatgccgataccacgcaggaggaatgacttggatgat
cctgaaaggggtatgatatttgtttgcagtgcgacccacaaaacaaagtccatgttcttc
ttccttgcccaaactgagcaaggtgacatcttcaagatcacgttagagacagatgatgac
atggtgacagagatacgcatgaagtactttgacactgttccagttgcaacttccatgaat
gttctaaagacaggcttcctcttcattgcatcagagtatggcaatcactacctgtatcag
attgcccatcttggagacgacgatgatgagcctgaattcagcagtgctacaccccttgag
gaaggggatacctttttctttgcacctcgtaccctcagaaaccttgaagaggtggaccag
ttggaaagcctttctcctattctcgcttgtcagattgcagacttagccagtgaagacact
cctcagctctatgtagcgtgtggtagaggaccaaggtcatccatgagggttttaaggcat
ggattagaggtatctgaaatggctgtatcagagcttcctggtaaccccaatgctgtatgg
actgtcaagaagaaatcagatgatgagtatgatgcttacatcattgtgtctttcgtcaat
gccaccctggtcctctccatcggtgagactgtagaagaagtgacagattctggtttcttg
ggtaccacgccgaccctctcatcatcacttataggagatgatgcactcttacagatctac
ccagatggtatacgtcacatccgtgcagacaagcgtgttaatgaatggaagacccccggt
aagaagtccattgttaagtgtgctgttaaccagagacaggtagtcattgcactgacaggt
ggagaactcgtctactttgaaatggatccaacaggacagctgaatgaatacactgagagg
aaggagatgaatgttgatgtgaagtgcatgagccttgccacggtgccctcgggtgaacaa
cgagcaaggttcttagctgtaggtcttgatgacaacaccgtacgcatcatctcactagac
caatcagactgtcttcaacctctgagtatgcaagcactaccagcccctgcagaagctcta
tgtatcattgagatgggaggtactgaagccagggaagatactggtgagaggggtagctca
gggggcctcttcctcaacattggtctccagaatggtgtattactaaggatggtattagac
tcggtgactggagatctttctgatacaagaacaagataccttggttcaagaccagtgaaa
ctcttcaggattaacatgcaaggatcagaagctgtgcttgctatgtctagtcgatcttgg
ttgagttactggtatcagtctcggtttcatctcacaccactgtcgtacgaaaccttggag
tttgcatctggattcgcctcagagcagtgtcctgaaggaatcgttgccatctccacaaac
acgcttaggatcttggccttggagaagctaggagctgtgtttaaccaggtatcaacgcaa
ctgaaattcacgcctagaaagtttgccactcaccttgagaataacaacattgttgtgata
gaatcagatcataatacgtacacagattctaccaaagcacagaggaaacaacagatggct
gaggaaatggttgaagcagcaggagaggaagagaaggagctagcagctgagatggctgaa
gcttttatccaagaggagttgccggagtctaccttcagctcccctaaagctggatcagga
atgtgggcatctacgatcaggcttcttaacccggtacaaggacagactctagatatggtg
gagttagaacagaatgaagcagcattcagtcttgcagtagtgaaatttgccaatcgtgag
gatgagactcatgtcttagtagggacagctaaagatgtgacgttgagtcccaggacctgc
tctggaggtgctatacatacatacctactcacagaagaaggaaagaaactggaattttta
cacaagactcttgtggacgatgtaccatcagctatcgcttcattccaaggaagggtcctc
atcggaataggaagacttctcaggatatatgatctgggcaaaaagaaactactcagaaaa
tgtgaaaataagcacattccaaacttcatcacaaacatcatgacgacaggtaaccgtatc
atcgtgagtgatgttcaggagagtctccattttctcaagtataagaggcaagagaatcag
atggttatctttgctgatgatagtaaccctcgatggataacagccacgtgcctcctcgac
catgatacagtcatgtgtactgataagtttggaaacatcactgtgctgaggttacctacg
agcatcaatgacaacgtagatgaagaccctacaggggtgaaggcactctgggatcgtggt
ttgctaaacggagcatcccagaagactgacgtcgtctctagtttcttcattggtgagaca
gtcctgtcgttacagaaagctacgctcattcctggaggatcagaatctgttgtctatacc
actctatctggagccattggtgttctggtaccattcacctcacacgaggatcatgatttc
tttcagcatcttgaaatgcacatgagatcagagtatgcaccactttgtggaagagaccat
ctctcgtacagatcatactactatcctgtcaagaacgtgattgatggtgatctgtgtgaa
cagtacaattctatggatctatccaagcagaggactgttgctgaagaactagataggaat
cctagtgaagtttcgaaaaagctggaagacatcagaacgagatttgccttttaa
DBGET
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