Lytechinus pictus (painted urchin): 129254471
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Entry
129254471 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129254471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129254471
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129254471
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129254471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
129254471
NCBI-ProteinID:
XP_054748911
LinkDB
All DBs
Position
2:complement(54690068..54745292)
Genome browser
AA seq
2396 aa
AA seq
DB search
MNLDSLSLAFSQITNLVANLNKKNYKQSVGEISRLVSHNGPEADRHLLRCLFSYIDFCDG
KSSGKDFYETQLLIQECSLLITKPNFVSTLCFAIDNPLHQQKSLKPSQQFFTQLSKILKL
TSVQEVVFGLALTHSVKPETRSLALQFVKQKLPDLVRAYIDADIRNQQESGLADFSVEIL
QLLLSHLLYRSPDQLGLGTVQLEAFTKTLKKEFPPERVPVVLAPLLYGDKQDIHMDRVIS
DSIAIPKGVMDGSLAELMQEMGYSCCATVEECHKTLVQFGINGLTAGNVAKVIGMMARTH
TGLMDNLPLQSVSGASVWSDGKDKQDQSGQLSTWDVDTFIKVVRELAPHINFKEVVFELD
HPGFYIGDSQSLRLVKTALIRGLQQEVFPVEALYTRVWKNFEGQLSWIQQALSQPDIFCF
ADYPCHPVVIDILKAPPEEENRKIATWKSLELVEVLLKLSETGKYEQVKNLFSFPIKHCP
DMLLLALLQVQPTMTPLRLELIAVLMPIFLGNHPNSGIVLHYAWHGQGQSPTIRQIVMHS
MADWYMRGDSDQTRLSRILDVAQDLKALSLLLNATPFLFVIDLACLASRREYLKLDKWMT
DKIREHGESFVQTCVKFLKRRAPQVMGGMPPEPRELPGGGKTGVLPPETIGTMLACLQAC
VSSVSPELAETIMNMVANCGNLLKSRPPPGVMNNQGIPPISPGPGTPIDSLPGMPPLGST
MGTSMGSTMASNMGSTMGSTLGSTMGSTMGSSAPSMTTPNLHPFSSNPLGSSFGQPPQSP
QKTFPMLSGPGPNLGGLINPSQSTSHQSSLHTNSQSTMSQPPKSGAGAIRPGDISNIWPE
LNQSFSPEIDEEANSYFQQIYNQPPNPIMSVDDVLQMLKQFKDSQVTREREVFMCMLRNL
FEEYKFFPQYPERELLITACLFGGVIEQGLVTFMALGMALRYVLEALRKSHNSKMYMFGI
AALDKFKLRLKDFAQYCTHVASIPHFKQFPEHLIEYVTYGQQSMEPPVASRPQPTPTTTT
ATVTTTASSILSTTKPTTATTTVSAIKPIAKAAPKPSIANTTNIDTLLVATPKEEIKEPS
EQVQDKIAFIFNNLSQVNLVQKCEEMKELCLEEHLEWISRYLVLKRASIETNFHTLYSNF
VDQIKLAKLADLVLKETYRNIGVLLASSKSDSNFSDRTLLKNLGHWLGKLTLAKNKPILQ
VDLDMKALILEAYHKGQAELLYVVPFVAKVIESCTKSRIFKPPNPWTMAIMNVLAELHQE
PNLKLNLKFEVEVLCKAFSITMDDLKPGMYLKDLEMVGLIPHKLTTSKKFMEGGAFGISV
GMGQDNPPSSVGGLAVPLPTVPNSSLVGDQGIASAVPTPPTPSLPATPAPVPQFSFQDLN
TSALTGIAPLTSVNAQLAIFQAHPQLRNCVRPAVERAVQELVHPVVDRSIKIALSTCEQI
VKKDFALDPEENRMRLAAHHMVRNLTAGMAMITCHEPLIFSIINNFKLSCIAALKGGTPQ
QKELIEQAASVVANDNVELACCFIQKCAVEKAIPEMDRRLATEIELRKHARNENRRYCDP
VVLTYQAERMPEQIRLKVGGVPQGQIAVYEEFARSIPGFLPTPEANQPPGFLAKLTQSYA
VDEITQIYDKCITEIDQHLQFINQVMPQSQHVQILHALLESVMVARNSREIVTALACLQK
AVEGLLEGYTVSSLDPNAALRYRDAHILVLKSLQDQRAYGPQWTNKQVTRVVCETNSERK
YNLDAIEQLLRTHLVNLQTIDMHIATSMENGLNYGAVGFAMSVVKRFLIDEKQSNVLNEA
DLYNTLHVLARIATQSPNPPEGLPQLIELVRQNHDPAFLDKAPGGPTSMMHSGISQAREF
DDPPGLREKTEYLLREWVNMYYSPAGGKDSTKAFSAFVNQMHQQGILKTDDLITRFFRLS
IELCVDVCYRALAEQVHSQALTRAKCFQTLDAFVRLIALLVKHSGDATNPVTKINLLNKV
LGIVAGVLLQDHEVRQTEFHQLAYHRIFSMLLLELNAPEQILEAINFQVMSAFCNALHVL
RPSKAPGFVYAWLELISHRIFIARMLGMLPQQKGWPMYAGLLTGLFKFMTPFMRNAELPK
HLALLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFXSYMRLPDPF
TPNLKVDMLADIAHHPRILTNYVTVIQPASFKKDLDSYIKTRSPVTFLSELRSHIQVSQE
PGQRYNVSLMNALVLYVGMQAINYIQSKGSTPSMSTITHSSHMDIYQNLVVDLDTEGRYL
FLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLIT
FIELIRNHHFKFWSHEFVHCAPEIKKLFESVARSCMQQKGSAQPGIARDNAEVHET
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggattccctgtcgctggccttttctcagattaccaatcttgtggccaatctc
aacaaaaagaattacaagcaaagtgtcggggaaatctctcgcctcgtttctcacaacggg
ccagaggcagacaggcacctgctgcgctgcctcttctcctacattgacttttgtgatggt
aagagcagcggcaaagacttttatgagacgcagctgctgatacaggagtgctctttactt
atcaccaaacctaattttgtttcaactttgtgctttgctatcgacaaccctctgcaccag
cagaagagtctaaagccaagccagcagttcttcacccaactgagcaaaatcttaaagctc
acttcagttcaagaagttgtctttgggcttgctctgacacactcagttaaacctgaaacc
aggtcactagctctccagtttgtaaagcagaagttgcctgatcttgtccgtgcctacata
gatgctgacatacgtaaccagcaagagagtggattagcagacttttctgtggagatactc
caactgctcttgagccatctactttacagatcgcctgatcagctaggacttggaactgta
cagctagaggccttcaccaagactctcaagaaagaatttccgcccgagcgagtaccagtg
gtacttgctcctctgttatatggtgacaaacaagatattcatatggacagagtgatttct
gacagcattgcaatacctaaaggagtgatggatggctctctggcagagcttatgcaggag
atggggtacagctgttgtgccacggtggaggaatgccacaagacccttgtccagtttggc
atcaatggattgaccgctggcaatgtagccaaggtcatcggtatgatggccaggacccat
acaggccttatggataaccttcctctacagtcggtgtctggggctagtgtctggagcgat
ggcaaggacaaacaagaccagtctggccagctctccacctgggacgttgacaccttcatc
aaggtggtaagagagcttgccccacacatcaacttcaaggaggttgtgtttgaactggat
catccaggattctacatcggtgacagccaatcactgaggctcgtgaagacggcattgatc
agaggtcttcagcaggaggtcttccctgtcgaagccctctacactagagtatggaagaat
tttgaaggacagttatcatggatccaacaagccctatcacagcctgatatcttctgcttt
gctgattatccttgtcatccagttgtcattgacattctcaaggcaccaccggaagaagag
aacagaaaaattgctacatggaaatcccttgagctggttgaagtgttgctgaagctctca
gagaccgggaagtatgaacaagtcaagaacctttttagctttcccatcaaacattgtccc
gatatgctgcttcttgctttactacaagtacagccgacaatgactccattacggttagag
ctgatagcagttctcatgccaatattccttgggaaccatccaaactctggcatcgtacta
cactatgcgtggcatggacaggggcagtcacccaccattcgtcagattgtgatgcactcc
atggctgattggtacatgcggggagacagcgaccagactaggctgtcaagaatccttgat
gtggcccaggatctcaaagccctgtctcttctcctcaacgcaacaccgttcctctttgtg
atcgacctagcctgcctggcatcacgcagagagtacctcaagctcgacaagtggatgacg
gacaagatcagagaacatggagagtcctttgttcagacatgtgtgaagtttctgaagaga
cgtgcccctcaggtaatgggagggatgcccccagagcccagggagttgcctggagggggt
aagacaggggtgttaccccctgaaaccattgggacaatgttagcctgtctacaagcatgt
gtcagttctgtgtcacctgagcttgctgaaaccatcatgaacatggtggctaactgtggt
aacctgctcaagtctcgtcccccaccaggagtaatgaacaaccaggggattcccccaatc
tccccgggaccaggcacaccaattgactcgcttccgggcatgcctcctctaggctctaca
atgggaacatccatgggctccaccatggcctcaaatatgggctccacgatggggtccacc
ttgggctcgacgatgggatcgacaatgggatcgtctgcaccatccatgaccacgcccaac
ctacaccccttcagctcaaaccctctggggtccagcttcggccagcctcctcagtcgcca
cagaaaacattcccaatgctgtcaggacctggtcccaacctaggtggactcatcaatcca
tcccagtctaccagtcatcaatcttcattgcacactaacagtcaatcaacaatgagccaa
ccccctaaaagtggtgccggtgctataagaccaggtgatatatcaaatatatggccggag
ttgaaccagtctttttcaccggagattgacgaggaagcaaacagctactttcaacagata
tacaaccagcctccaaaccctataatgtcagtggatgatgttcttcaaatgcttaaacaa
ttcaaagattcacaagtcaccagggaaagggaggtgttcatgtgtatgctgaggaattta
ttcgaggaatacaagttctttccccagtatccagagagagaactcttgattactgcatgt
ctgtttggaggcgtcattgaacaaggtttagtcacgtttatggctctaggaatggctctg
cgctatgtgctggaagccctaaggaagtctcacaacagcaagatgtacatgtttggtata
gcagcactagataagttcaagctacgtctcaaagactttgcccagtactgtacccatgtt
gcttccatccctcacttcaaacagttcccagagcatcttattgagtatgtgacgtacggt
caacaatccatggaaccaccggtagcaagcagaccacaacccacacccacaactactaca
gcaacagttacaacaacagcttcatctatactgtcaacaacaaagcctacaacagcaact
accaccgtgtcagccatcaaacccattgccaaagcagctcctaagccttccattgctaat
accaccaacattgatacactcctggtggctacacctaaggaagagatcaaagaaccttca
gaacaagtccaggacaagattgctttcatcttcaacaacctctcccaggtcaacctagtg
cagaagtgtgaagaaatgaaggagctttgtttggaggaacatcttgagtggatatctcgt
tacctggttctgaagagggctagcatcgagacaaacttccacacactctactctaacttt
gtagatcagatcaaactcgctaagctcgcagacctggtgctaaaggaaacctacaggaat
atcggggtgctgctagcatccagtaaaagtgattcaaacttctcagataggaccctattg
aagaatcttggacattggcttggaaaactcactttagcaaagaacaaacctatcttacaa
gtggatctggatatgaaagccctaatcctagaggcctaccacaagggccaggctgaactc
ttgtacgtggtaccctttgtggccaaagtgatcgagtcttgcacaaagagtcgcatcttc
aagcctcccaacccctggaccatggccatcatgaatgtcctggcagagcttcaccaggaa
cccaatctcaagctcaacctcaagtttgaagtagaagtcctctgcaaagccttcagtatc
accatggatgacttgaagcctggtatgtacctgaaggatcttgagatggtcggtctcatc
ccccacaagttgacgacttccaagaagttcatggagggtggggcgtttggtatctctgta
ggtatgggtcaggacaaccccccttcatcagtaggtggcttggccgtgccccttcctacc
gtacccaatagttcacttgttggtgatcaagggattgcgtcagctgttcctacaccgcct
actccatcattgcctgccacacctgcacctgttcctcagtttagcttccaagatcttaac
acatcagccttgacaggaatcgctcctcttacatccgtcaatgcgcagttggcgatcttc
caggcccaccctcagttgcgtaactgtgtacgcccagccgttgagagggcagtccaggag
ctagtacatcctgtggttgatagatccattaagatagctctcagcacctgtgaacaaatc
gtcaagaaggactttgccctagaccctgaggagaatcgtatgcgtcttgctgctcaccac
atggtgcggaacttgacggctggtatggccatgatcacctgccatgaaccactcatcttc
agtatcatcaacaacttcaaactgtcctgtatagcagctctcaagggtggtactccacag
cagaaggagctgatagaacaggcagcatctgtggttgccaacgacaacgtagaactggcc
tgttgcttcattcagaagtgtgctgtagagaaggccatccctgagatggaccgaagactt
gccacagagattgagctgaggaagcatgcgaggaacgagaatcgtcgctactgtgatcca
gtggttcttacctatcaggctgaaaggatgccagaacagattagactaaaagttggagga
gtccctcaaggtcagatagccgtctatgaagagtttgctcgtagcattccaggattcctg
cccacaccagaagccaaccaaccaccaggttttttagccaaactcacccagtcctacgct
gttgatgagatcacacagatctatgataagtgcatcacggagatcgaccaacatcttcag
tttatcaaccaagtgatgcctcaatcccagcatgtacagatcttacatgccctgttagaa
tcagtcatggtagccaggaactccagggagattgtcacagctcttgcctgcctccaaaag
gctgttgaaggtcttctagaaggctacacagtaagttctctggaccccaatgcagccttg
cgctaccgagatgcacatattctagttctcaagtctctacaagatcagagggcctatggt
ccacagtggacaaacaaacaggtcactagagttgtctgtgagacgaatagcgagaggaag
tacaaccttgatgccattgaacagctgctgaggacacaccttgtcaacctacaaactatt
gatatgcatattgccacctcgatggagaatggccttaactacggtgctgttggttttgcc
atgagcgtagtcaagcgattcctcatcgatgagaaacaaagcaacgtgctgaatgaagcc
gatctctacaacacactacatgttctggctaggattgctacacagagtcctaatccacca
gagggcttgcctcagttgattgagcttgttagacagaaccacgaccctgcctttcttgac
aaagcacccggtggcccgacctccatgatgcactccggtatctcccaggctcgtgagttt
gatgatcctccgggcctcagggagaagacagagtacctcctgagggagtgggttaacatg
tactactcaccggccggtggtaaggacagcaccaaagctttctcggcatttgtcaatcag
atgcaccaacagggtatcctgaagacggacgacctgatcacacgattcttccggctctcc
attgagctgtgcgtggatgtttgctaccgggccttggcggaacaggtccacagccaggcc
ctgaccagagccaagtgcttccagaccctggatgcctttgtccgtctcatcgctcttctc
gtcaagcactccggagacgctaccaacccagtcaccaagatcaatcttctcaataaggtg
ttgggtatcgtagcaggtgtgttgcttcaggatcacgaggttcgtcagacggagtttcat
cagttagcctaccatcgtatctttagtatgcttctgttggaactcaatgctcccgagcag
atcctagaggccatcaacttccaagtcatgtcggctttctgcaatgctcttcatgtactg
agaccatctaaagcaccaggttttgtatatgcttggttagaactgatctcacatcgtatc
ttcattgctaggatgttgggcatgcttccacaacagaagggatggccgatgtatgctggc
ctactaacaggtctcttcaagttcatgacaccattcatgcgcaatgcagaacttccaaag
cacctagctctactttacaagggtactctgagagtgctgctagtgcttctacacgatttc
ccagagttcctttgcgattaccattacggcttctgtgacgtcatcccaccaaactgtatc
cagatgcgtaacctgatcctatcggcattcnaatcttacatgagactacctgacccattc
acacctaacctcaaggtggacatgttagcagacattgctcatcatcctcgcatcctgacc
aactatgttactgtcatccagcctgcctcatttaagaaggatctggactcctacatcaag
acccgtagccctgtaaccttcctctctgagctacgcagtcatatccaggtctcgcaggaa
ccaggtcaacgttacaatgtatccctgatgaatgccttggtgctgtacgtgggtatgcaa
gccatcaactacatccagagcaagggaagcacgccctctatgagcaccatcacgcattcc
tcccacatggacatctaccagaacctggtcgtggatcttgatacagaaggtcgttacttg
ttcttgaatgccattgccaatcagctacggtaccctaacagccatactcactacttcagc
tgtacactcctctacctgttcgctgaggctaacactgaggctattcaggagcagatcaca
agagtgctactggagcgtttgatcgtgaacaggccccacccatggggacttctcatcaca
ttcattgagcttatccgtaaccatcacttcaagttctggagccatgagtttgtccattgt
gcccccgaaatcaagaagctgtttgagtctgtggctcgtagctgtatgcaacagaagggc
tctgctcaaccaggcatagccagagataatgcagaagtacatgaaacgtaa
DBGET
integrated database retrieval system
