Lytechinus pictus (painted urchin): 129254809
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Entry
129254809 CDS
T09066
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03030
DNA replication
lpic03410
Base excision repair
lpic03420
Nucleotide excision repair
lpic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129254809
03410 Base excision repair
129254809
03420 Nucleotide excision repair
129254809
03430 Mismatch repair
129254809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpic03032
]
129254809
03036 Chromosome and associated proteins [BR:
lpic03036
]
129254809
03400 DNA repair and recombination proteins [BR:
lpic03400
]
129254809
DNA replication proteins [BR:
lpic03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
129254809
DNA Replication Termination Factors
ELG1-RFC complex
129254809
Chromosome and associated proteins [BR:
lpic03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
129254809
DNA repair and recombination proteins [BR:
lpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
129254809
Check point factors
HRAD17(Rad24)-RFC complex
129254809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_11
RuvB_N
AAA_22
ResIII
RCF1-5-like_lid
AAA_14
AAA_24
AAA_30
AAA_16
DUF815
DEAD
AAA_assoc_2
TIP49
AAA_5
AAA_7
nSTAND3
AAA_19
PhoH
ATPase_2
bpMoxR
Thioredoxin_6
AAA_28
Mg_chelatase
AAA_2
BrkDBD
RNA_helicase
DUF3802
NPHP3_N
AAA_3
Motif
Other DBs
NCBI-GeneID:
129254809
NCBI-ProteinID:
XP_054749314
LinkDB
All DBs
Position
2:complement(73794738..73814354)
Genome browser
AA seq
330 aa
AA seq
DB search
MNRGNEHKNLPWVEKYRPNSLDDLISHTEIINTIQKFIKEDRLPHLLFYGPPGTGKTSTI
LAVAKQLYSTKEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADAM
TNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEYVV
REENVDMTEDGKKALITLSKGDMRRVINILQSTSMAHEKVTEENVYLCTGHPLRSDIENI
VNWMLNEDFTAAFNYINQVKTIKGLALQDILIEVHTYVHRIEFPQKVRIYLLDKMSDIEY
RLAAGTSEKLQLGSLVAAFQSARDMVAAEA
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgtggaaatgagcacaagaatttaccatgggttgagaaatatcgacccaattca
ctagatgacctcatctcacatacagaaatcatcaacaccattcagaaattcatcaaggaa
gatcgcctaccccatctgctcttctatggaccaccaggtacagggaaaacatccaccatc
ttggcggttgctaagcaactctactctaccaaggaattcaactcaatggtcctggagctc
aatgcatcggatgatagaggtattggtattgtcagaggtagtatcttgaactttgctagc
accaggaccatcttcaaatcgggtttcaagcttgtcatcctagatgaagctgatgcaatg
accaacgatgctcaaaacgctctaaggagagtaattgaaaagttcacagagaacactcga
ttctgcttcatctgcaactacctgtccaagatcatcccagccctacagtccaggtgcacc
cgcttccgcttcggtccccttgacaaccaacaaatagtacccagactggagtatgttgtt
agggaagaaaatgttgatatgacggaggatggtaaaaaagctctcatcacattatccaag
ggagacatgagacgagttatcaacatcttacagagcacttcaatggcacatgagaaagta
acagaagaaaacgtttatctgtgtaccggtcatccactgaggtcagacatagagaacatt
gttaattggatgctgaatgaagactttacagcagcttttaactatatcaaccaggtgaag
acaatcaaaggtcttgctcttcaagacatcctaatagaagtacatacatatgtacacaga
attgaatttccacagaaggtccggatatacctcttggacaagatgtctgatattgagtat
cgactagcagcaggaaccagcgaaaaactgcagctcggatctctggtagcagccttccaa
agtgcacgagacatggtagcagcagaggcatga
DBGET
integrated database retrieval system
