Lytechinus pictus (painted urchin): 129261602
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Entry
129261602 CDS
T09066
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lpic03041
]
129261602
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129261602
Spliceosome [BR:
lpic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129261602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
DEAD
Ank_2
Ank
HA2_N
Ank_5
Ank_4
Ank_3
AAA_19
AAA_22
ATPase
nSTAND3
T2SSE
FtsK_SpoIIIE
AAA_7
PhoH
AAA_16
Pox_vIL-18BP
AAA_29
Motif
Other DBs
NCBI-GeneID:
129261602
NCBI-ProteinID:
XP_054755631
LinkDB
All DBs
Position
5:58416660..58440146
Genome browser
AA seq
1165 aa
AA seq
DB search
MDDNGEEDCSPAFQMGAATCNELQGLLQQFPVTAKERQELQPKVERRRFGPSEVNPAREM
NKATGRLNSSLPQVPSKRNRSDLDSFRQTLPVYAMRNEILATINNNRVVLVVGDTGSGKT
TQLPQFILDECFEMKRPCRIICTQPRRISALSVSERVAAERGEAIGQTVGYQIRLESRVS
PKTLLTYCTNGVLLRTLMTGDAALDVITHVIIDEIHERDRFSDFLVTQIRDLMTRKRHLT
LVLMSAALDVQLFVRYFNNCPIVSVPGNMFDVEELFLEDALKCTRYTNAKMIEYQKEKGK
VAKQQQQLNKWYNTDQVGGASASKGHSVAPVHPSVDSLSRDFRATTMGPSAADTSIDVED
MAEWLIHDMDSALSDCWKTGDDDYFSQLLYLLLNENVSVDYAHSESSVTPLMVAAGRGNV
EMVEQLLSLGANASLKASDERTALDFARMFNQTEVLQLLQAYMDTVQATNEDESELLRNH
SEVSAEDRELLQAYHHSFDDEKVDLNLILALLDYICSNSQEGAILVFLPGYDDIVTLRDM
LLQDDTFSDRQSYQIYTLHSSMQSHDQKKVFKTPGQGIRKIVLSTNIAETSVTINDVVFV
IDSGKVKEKSFDAIANISSLKSNWISKASAKQRRGRAGRVRPGMCFHLISRVRYQSLPDF
QVPEILRTPLHELCLHTKLLAPNETSVGDFLKRAPEPPATVAIRNAVNLLKSIDAMDKWE
DLTELGCHLADLPVDPRLGKMVLYAIVLKCLDPVLTIVCALAYKDPFVLPSHPSQKRGAM
QIRKKYSSNTFSDHMALLRAFQSWQRARSDGWEGTFCDRNFLSRATMEMIVGMRTQLLGQ
LRASGFVRARGPGDIRDLNTNSENWAVVKASLCAGMYPNILKVDRERRQLTTKTESKVRF
HPNSVLHEVAKGKTSLGEEHMRTVDSLPSDWLLYDELTSSHFRTSVRCVTLISPITIALF
CGPTRLPYDALVLPEGTASSIASRMGPNGDAANDSSEGEDDDVKVAKATLKLDEWLVIKS
EPMSASLVLQLRTKWHTLFMRRMRTPAKPWSQADEAVLKTLIKVLTNEEQSLGLQQPVGV
GQRPKPMGMKGSNRYLTLTKKSINRMDDNGEEDCSPAFQMGAATCNELQGLLQQFPVTGQ
ERQELQPKVERRRFGPSEGEFISNF
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacggagaagaggattgctcacctgctttccagatgggagcagcaacttgc
aacgagttgcagggattgctgcaacagtttccagtcactgctaaagaacgacaggaacta
cagcctaaggtggagaggagaagatttggaccaagtgaagtaaacccagctcgtgagatg
aacaaagcgactggacgactcaacagcagtcttcctcaggtgccctccaagagaaatagg
tcagatcttgatagctttcgtcagacgctgccagtttatgctatgaggaatgaaatactt
gcaaccatcaataataacagagtagtcctagttgttggtgatactggatctggaaagaca
actcagcttcctcaattcatattggatgaatgctttgaaatgaaaaggccatgtcgcatc
atctgtacccagcctagacggatatcagccctatcagtatctgagagggttgcagctgaa
agaggagaggcaatagggcagacagtgggttatcaaatcagactagaaagcagagtttca
ccgaagaccctgcttacgtattgcaccaacggtgttctactacgaaccctaatgacagga
gatgcagcccttgatgtaatcactcatgttattattgatgaaattcatgagagggataga
tttagtgatttccttgtgactcagatcagagacctcatgacaaggaaaagacatctcaca
cttgttctcatgagtgctgcccttgacgttcagctctttgtacgctacttcaataactgc
cccattgtctctgttccaggaaatatgtttgatgttgaagagctatttcttgaagatgcc
ctgaagtgcacacggtacacaaatgcaaagatgattgaatatcagaaggagaaaggaaaa
gttgccaagcaacaacaacagctcaacaaatggtacaatactgaccaggtaggcggagcc
tcagcaagcaagggccattcagtggctcctgtgcacccatcagtagactcgttatcaaga
gacttccgagctacaactatgggaccatctgcagctgatacatctattgatgttgaggac
atggcagagtggctcatccatgatatggatagcgccctctcagactgttggaagacaggt
gatgatgattacttctctcaactcctctaccttctcctcaatgagaatgttagtgttgac
tatgcacattcagagtccagtgtgactccactgatggttgcagcagggcgaggcaatgta
gagatggttgaacagcttcttagccttggtgcaaacgcttctctcaaagcatccgatgaa
aggacagctttggattttgcaaggatgttcaaccaaacagaagtattgcaacttctgcaa
gcatatatggacacggtccaagctaccaatgaggatgagagtgagttattgaggaatcac
agtgaagttagtgctgaagacagagagctccttcaagcttatcatcacagctttgatgat
gaaaaggttgacctcaatctgatccttgctctccttgactacatatgcagcaactcacaa
gaaggtgccatacttgtcttcctacctggttatgatgacattgttaccctacgtgacatg
ttgctccaggatgataccttcagtgatcgtcagtcctatcagatctacacacttcattcc
agcatgcagagtcatgatcaaaagaaggtcttcaagacaccaggccagggcattagaaag
attgtgctttcaacaaatatagcagaaaccagtgtaactatcaacgatgtagtctttgtt
atagactctggaaaagtcaaggagaaatcatttgatgcaatagccaacatctcatcactg
aagagcaactggatatccaaggcaagtgccaagcagagaagaggaagagctggtcgtgtt
cgtccaggaatgtgttttcatctgattagtagagttcgctaccagagtctacctgacttc
caggttcctgaaatcctcaggacaccattacatgaattgtgtcttcacaccaaacttctt
gcccctaacgaaacatcagtaggtgacttcttgaagagagctcctgaaccacctgctact
gtagctatcaggaatgctgtcaatctactcaagtctattgatgctatggataaatgggag
gacctgacggagcttggttgtcacctggcagacctaccagtagacccaaggctcggtaaa
atggtcctttatgccattgtcttgaagtgccttgatccagtccttaccatcgtgtgtgct
cttgcctacaaagacccatttgtgcttcccagccacccttctcagaaacgtggtgccatg
caaatccgcaagaaatattcttccaacactttcagtgatcacatggccttgcttagggca
ttccagtcatggcagcgagctcgtagtgatggatgggaaggtacattctgtgatagaaac
tttttatcaagagcaaccatggagatgattgtaggaatgagaacccagctgttaggccag
ctgagagcgtctggctttgttagggcaaggggaccgggagacatccgtgatctcaacacc
aactcggagaactgggctgtggtcaaggcatctctatgtgctggcatgtatcctaacatt
ctcaaagtagatagagaacgcagacaactcaccaccaaaacggaatccaaggtgcgcttc
catcccaactcagtactccatgaagtggctaagggcaagacctcacttggtgaggagcat
atgagaactgtggatagtttaccttcagactggcttctatatgatgagctcaccagctct
cacttccgtaccagtgtgcggtgtgtgaccctcatctcacccatcaccatcgccctgttc
tgtggccccacccgtctaccttacgatgccctggtcctaccggaagggaccgcatcatcc
atagcatccagaatgggacccaatggagatgctgctaatgactccagtgaaggagaggat
gatgatgtcaaggttgccaaggcaacactcaagttggatgagtggttggtcatcaagtct
gagccaatgtcagcgagtttggtcctgcagttaaggaccaaatggcatacattgttcatg
agaaggatgagaactccagctaagccttggtctcaagctgatgaggctgtgctgaagaca
ttgattaaagtactgaccaatgaagaacaatctctaggtctacaacagccagtaggagtt
ggccagagacctaaaccaatgggtatgaagggatccaatcgttacctgaccctgaccaag
aaatcaatcaacaggatggatgataacggagaagaagattgctcacctgctttccagatg
ggagcagcaacttgcaacgagttgcagggattgctgcaacagtttccagtcactgggcaa
gaacgacaggaactacagcctaaggtggagaggagaagatttggaccaagtgaaggtgaa
tttatatcaaatttctga
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