Lytechinus pictus (painted urchin): 129262265
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Entry
129262265 CDS
T09066
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03013
Nucleocytoplasmic transport
lpic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129262265
03015 mRNA surveillance pathway
129262265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129262265
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129262265
5.6.2.5 RNA 5'-3' helicase
129262265
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129262265
mRNA cycle factors
Common to processing body (P body) and stress granule
129262265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
AAA_16
UvrD-helicase
NPHP3_N
DEAD
NAT10_TcmA_helicase
nSTAND3
ATPase
SRP54
AAA_22
AAA
PhoH
DUF269
Motif
Other DBs
NCBI-GeneID:
129262265
NCBI-ProteinID:
XP_054756328
LinkDB
All DBs
Position
5:64737563..64756466
Genome browser
AA seq
1155 aa
AA seq
DB search
MSVDAYGPSSQSLLTFLDAEEHDLLGADTQGTDFDYNVGDFTLPSQTQASQSQASQLDLA
SQSQSQVDASQTNGIDESVAAVGQQVKELTFEEDEEDATVLSKDLPNHACKYCGIHDPAA
VVLCNGTKKWFCNGRGNTSGSHIINHLVRAKCKEVTLHKDSPLGETVLECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRCFLKWLVKIPTEQEQLR
ARQISASQLNRLEELWKENPEATLEDLEKPGVDEEPASVMLRYEDAYMYQNIFGPLVKME
ADYDRKLKETQTQEGVTVRWDIGLNRKTRATFNFPKKEDLKLMHGDELRVRYTDPREPWS
GLAHVVKTPDNYSDEICVELKSSSNIPVKFTTNFAVDFVWKSTSFDRMQNALKTLAVDDT
AVSSYLYHRLLGHDVENLVLKCNLPKRFSAQGLPELNHSQVSAVRTVLTRPLSLIQGPPG
TGKTVTSASIVYHLAKQGTGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSP
VSFLSLHNQVRNMEGAEEMQKLQALKDEMGELSSNDEKRYRTLKRNCERELLQNADVICC
TCVGAGDPRFARFRFRAVLIDESTQSTEPECLIPAVLGSRQLVLVGDHCQLGPVVMCKKA
ANAGLCQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAAERINRAV
DFPFPQPDKPMFFYATTGQEEIASSGTSYLNRTEAANVEKLTTRFLRAGVKPEQIGIITP
YEGQRAFIVQFMQYSGPLNVKLYQEVEIASVDAFQGREKDYIILSCVRANDHQGIGFLND
PRRLNVALTRGRYGVIIVGNPKVLSRHPLWNHLLTYYKEQKVLVEGPLNNLKESLIQFSK
PRKLINPSNPGGRYMSMAMFDAREALAPGGVFDRSRMSNGGPSHFPANHGRVHDQMGYIQ
PNQSRIAAANFPIPVNMFMPPPIPPGAPGFFNQPPPPNARGPGPNRGPNFSGSPGGGGRK
KGRGYQGSQHPRQQQQNNAASNGQGKAGGNSGSQNMSQYNLSLNSTQNSQPDVSQSFSQG
VLTQGNMSMSQPMSQPGLSQPGFSQMGLSQPGLSQPELSQESFMGESEFKSQLDAALSQD
STYQGDRNYMQGFGY
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagatgcctacggacccagctcgcagagcttgctcacgtttttggatgcggaa
gaacatgacctgctgggagccgacacacaaggcacagactttgactacaatgtgggggat
tttacattgccttcacagacacaagcttctcaaagccaagcatcccagttggatttggct
tcacaatctcagagtcaggtggatgctagtcaaaccaatgggatagatgagtctgtggct
gctgtaggacaacaggtcaaagaattgacctttgaggaagatgaagaagatgcgactgtg
ctctccaaagatttgcccaaccatgcctgcaagtactgtggcattcatgaccctgctgct
gttgttctctgcaatggaaccaagaaatggttttgcaatggacgaggaaacacctctggc
agccatatcattaaccatcttgtgagagccaagtgcaaggaggtgaccctccacaaggac
agtccacttggggaaaccgttctggaatgctacaactgtggatgccgcaatgtcttcttg
ctagggttcatcccagccaaggccgactctgtggtcgttctgctctgccgtcaaccctgt
gccactcagagcaacttgaaggatatgaattgggatccaagccagtggcagcctctaatc
caggatcgatgcttcttgaagtggctggtcaagatccctactgagcaggagcagctgagg
gcacgtcagatctctgcctctcagctcaaccgcctggaggagctgtggaaggagaaccca
gaggccaccctggaggatctggagaaaccaggagtagatgaggagcctgcctctgtcatg
cttaggtatgaggatgcgtacatgtatcagaatatctttggacctcttgtcaagatggaa
gctgattatgacaggaagctaaaagagacccagacccaagaaggtgtcactgttcgttgg
gatattggtctcaaccgcaaaacaagagccacctttaacttccccaagaaagaagatctg
aagctgatgcatggtgatgaactgagggtccgctacactgacccaagagagccctggtct
ggtttagctcatgtggtcaagactccagacaactacagcgatgagatctgtgtggaactg
aaaagcagcagtaacatccctgtcaagtttaccaccaactttgcggttgactttgtctgg
aagtcaacatcatttgacagaatgcagaatgccctgaagactctagcagtggatgacact
gccgtgtccagctatctgtatcaccgtctcttgggacatgacgttgagaacctagtcctc
aagtgtaacctacctaagcggttctcagcccagggcctccctgagctcaatcattcccag
gtgtcagctgtacgcactgtgctcacacgcccactaagtctcattcagggaccacctggt
actggcaagactgtgacatctgcttctattgtctatcatctggctaagcagggaactggg
caagtactggtgtgtgctcctagtaacattgctgtggatcagctgactgagaagattcat
aagactggtctcaaggtcgtcagattgtgtgccaagagcagggaggctatcgattcacct
gtctctttcctctccctccacaaccaggtgcgtaacatggagggagcagaagagatgcag
aagctccaagctctgaaggacgagatgggagaactgtcaagcaatgatgagaagaggtac
cgaactctcaagagaaactgtgagcgagagctactacagaatgctgatgtgatctgctgc
acctgtgttggagctggtgacccacgctttgctcgttttaggttccgtgctgtattgatt
gatgagagcactcagtccactgagccagagtgcctcatccctgctgttcttggatctaga
cagcttgttctagttggtgatcattgccagcttggtcccgttgtcatgtgcaagaaggca
gctaacgctggcctgtgccaatctctctttgagcgtctagttgtccttggaatccggcca
atcagacttcaggtccagtaccgcatgcacccgtccctcagtgcattcccatcaaacatc
ttctatgagggctcccttcagaatggagttacagcagctgagaggatcaaccgtgcagtg
gatttcccattccctcaacctgacaagccaatgttcttctatgctaccacagggcaggaa
gagattgccagttctggtacctcctacctcaacaggactgaagcagctaatgttgagaag
ctgacaacccgattcctgcgtgctggtgtcaagccagaacagattgggattatcacgcct
tacgagggccagcgtgcgttcatcgtacagttcatgcagtacagcggtcccctcaacgtc
aagctctaccaagaggtggagattgccagtgttgacgccttccagggacgtgagaaggat
tacatcatcctgtcttgcgtcagggccaatgaccaccaaggcatcggattcctcaacgat
ccaagacgtctaaatgtcgccctaactcgtggaaggtatggagtgataattgttggtaac
cccaaggtattgtcacgtcatcccctgtggaaccatctcctaacatactacaaggaacag
aaggtcttggtggaaggtccactcaacaatctcaaggaaagcttgatccagttcagcaaa
cctcgcaagctcatcaacccatccaacccgggaggtcgttatatgagtatggccatgttt
gatgccagggaagccctagctcctggtggtgtctttgacaggtccaggatgtctaatgga
ggtccatctcacttcccagccaaccatggacgtgtccatgaccagatgggttacatccaa
ccaaaccagtcccgcatcgctgcagccaacttccccatccccgtcaacatgttcatgccc
ccacccatccccccaggagcccctggcttcttcaaccagccccctccacccaatgcccgt
ggcccaggtcccaacagaggacccaatttctccggcagcccaggaggaggaggccgtaag
aaggggcgtggttaccaaggttcgcagcatccgcgtcagcagcagcagaataatgcagct
agcaatggacagggtaaagccggtgggaacagcgggagtcagaacatgtcgcagtacaac
ctgtctcttaacagcacccagaacagccagcctgatgtgtcgcagtccttctcacagggt
gtcctaacccagggcaacatgtccatgtctcagcccatgagtcagccaggactatctcaa
ccaggcttctctcaaatgggtctctctcaaccagggctatctcaaccagagctttctcag
gaaagcttcatgggcgagtctgagttcaagtctcagctggatgccgccctctcccaggac
tccacctaccagggagaccgtaactacatgcagggcttcggttattag
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