Lytechinus pictus (painted urchin): 129262324
Help
Entry
129262324 CDS
T09066
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129262324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129262324
03032 DNA replication proteins [BR:
lpic03032
]
129262324
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129262324
mRNA cycle factors
Common to processing body (P body) and stress granule
129262324
DNA replication proteins [BR:
lpic03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129262324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
129262324
NCBI-ProteinID:
XP_054756403
LinkDB
All DBs
Position
5:69451861..69478768
Genome browser
AA seq
1074 aa
AA seq
DB search
MVKVGDSSEDGNEGRISFKSDVERLQQTRRVYRSAQDLTHKLESVFRHKQAYRVVFEKDS
IEMRMRLRDLCERLMMLHPIDFGRKAEEILWWKVYYNVITLAKKSKKYIRSGSSLECAYR
THLLAATGFYHHLLMRLQWEYGLQENHIMDFISFPDQDQVKDTCMDANKPEAKDWAQKAC
HRCLIYLGDLARYRQEFEGPSSCLLAQRFYHQALVLNPAMGMPHNQLGTLAGTRYQGLDA
AYHYLRCWLSDLRFDGAIANLEKVFERNQKRFHELPSSPSPDLPAELQRPRDIKQFLIRF
LYLQELFQPSNKTSTDTLPSLCQEVLQGFHQCMLHGTICFKYEHFEIFEVLCLSNFHVFS
VVYLQAKGTQEGSNKSYLSNDIIFKLVVLTLMSTYRLQKAGSKQTSTAVVFTLALFSYIL
NHLCEKLNNAVYRKIYPDQTTTAFTKVQDSGGSTDGRASPANTITPILSQEVDSDGTVKP
AKKKQQKKKPKTVLKAMRRRRKRAGMGAHTSEESDLSEGEPGEDDRSNGSSGESGEERVL
AAESDSDYFMDSQELELDDEEALEKHNVHEDLQTPPPGEGEEIALTIMNDIMVEDMSSQL
ITPPAGPIHTPPGRRNIRLAPSFDAYTKETLSLKTKEDGQDKKGGSPMGSSQTSPGKENI
DTNVTSASTSPTELQTSQIPLPLIMEILTSEGLLPVIKILTDWLRTNEDFIIKTAQSSQP
LWARLASLLNMCPHEKSLVNQDWCGSIALRQLLEGALNSGNGKTWYQPIPLTEDIAIWTM
PPLQYLQKKMKFGIHHDLDLTAQEETVIRVLCLRQFGYYLSSIKGISLCCEDDHFISEAV
DQSDEQEDEEPQQQQDDETQQSGKPEEKADDGEARRQQVMRGMAQLRLQSEVSQLEGSIE
PLGMDTLSPYLIPDTAVLSNQLSVVRSLVATSRFIFIIPKAVVSQLDVNKKYQSKAREAI
KFMEKEFQIGNRYLRAQKDKESLRFDDNSKAKIDDVNVRTFCSIAECAHFFAVRSGDPSL
HSPANPTPGGMVTILTHSEPSDNSRVTATIDKLLNVGVDVTTARDFQAKWQAHT
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagtaggtgactcgtcagaagatggaaatgaaggtcgtatatcgtttaagtca
gacgtggaacgtcttcagcagactcgacgtgtttataggtctgcccaagatctgacccac
aagctggagtctgttttcaggcacaagcaggcctacagggttgtctttgagaaagactcg
atagaaatgcgcatgagattgcgtgatctttgtgaacgtttgatgatgcttcatccgatt
gattttgggagaaaagcagaagagattctctggtggaaagtctattataatgtcattacc
ttggctaagaagagtaaaaagtacatacgcagcggttcttctctggagtgcgcgtaccgg
acacacctcttggccgctacaggattctaccatcatctcctgatgagattacagtgggag
tatggcctgcaggagaaccacatcatggacttcatcagcttccctgatcaagaccaggtc
aaagatacctgcatggatgccaataaaccagaggcaaaggactgggctcagaaagcctgt
catcgatgtctcatctatcttggtgacttggcaaggtataggcaggaatttgaaggtcct
agtagttgtcttcttgctcagcgattctaccaccaagccctggtcctgaaccctgccatg
ggcatgcctcataatcagctgggtaccctggctggaacgcgctatcaaggactcgatgca
gcctatcattacttgcgatgctggctatcagatctgaggtttgatggtgctattgcgaac
ttggaaaaggtgtttgaaagaaatcagaagagatttcacgagttgccttcgagtccaagc
cccgatcttccagcagaattacagagaccacgggacatcaaacagtttctgattcgtttc
ctctacctgcaagagctgttccagccaagcaacaagacgtccactgacaccctgccgtcg
ctatgtcaggaggtgctgcagggctttcaccagtgcatgctgcatggtacaatttgtttt
aaatatgagcactttgaaatatttgaagttctgtgtttatcaaactttcatgtgttttcc
gttgtgtacctgcaggcaaaagggacgcaggagggcagcaacaagagctatctgtcgaat
gatattatcttcaaactggttgtgctgactctgatgagtacatataggctgcagaaagca
ggttccaaacagacatccacagctgttgtcttcacgctagccttgttctcatacatactc
aaccacctgtgtgagaaactcaataatgctgtctacagaaagatttatccagaccagact
actactgctttcacaaaagtccaagactcgggtggatcaaccgacggccgagccagtccg
gccaacaccatcacacccattctgagccaggaggtagacagcgacggcactgtcaaacca
gccaagaagaagcagcagaagaagaagcccaagacagtgctgaaggccatgcgacgtcgt
cggaagagggctggtatgggggcccacaccagcgaggagtctgacctcagcgagggggaa
cccggggaggacgatcgatccaatggtagctctggagagtctggggaggagagggttctg
gctgcggaatcggatagtgattacttcatggacagccaggagctcgagctagatgatgaa
gaggctttggagaaacataatgttcatgaggatttgcagaccccacccccaggagaaggc
gaggagatcgccctcaccatcatgaatgacatcatggtggaagatatgtcctctcaactc
atcacccctcccgccggccccatccacacccctcccggtaggcgtaacatccgcctagcg
ccaagcttcgacgcttacaccaaggaaacgttgtctttaaagaccaaggaggatggccag
gataagaaagggggatcccccatggggtcctcacagacttctccaggaaaagaaaacata
gataccaatgtgaccagtgcttcaaccagccctacggaactacagaccagtcagatccct
ctaccgctcatcatggagatattgacaagcgagggcctcctacctgtcatcaagatcctc
actgattggctgcggacgaatgaagacttcatcataaagacagcacagagttctcagcca
ctctgggctagactagccagtctcctcaacatgtgtccccatgaaaagtcacttgtaaac
caagattggtgtggtagcattgccctgagacagctccttgagggtgctctcaacagtgga
aatggcaagacatggtatcagcctattcctctgactgaagacatcgctatatggaccatg
ccgcctcttcagtacctacagaagaagatgaagtttggtatccatcatgacctggacctg
actgcacaagaagagactgtcatacgagtcctgtgtcttcgtcagtttggttactaccta
agtagtattaaaggtatcagtctttgttgcgaggatgatcatttcatcagtgaagctgta
gaccagtctgatgaacaagaggatgaagaaccccagcaacaacaggatgatgaaactcaa
caaagtggaaaacctgaagaaaaagcagatgatggagaagcaaggagacagcaagttatg
agaggaatggcccagcttagattacagtctgaagtcagccagctcgaaggcagtatagaa
cctcttggcatggacactctttcaccatacctgatccccgatacagctgtcttatccaat
cagctatcggttgtgagatcgttagtcgctacatcacgattcatcttcattatacccaaa
gcagttgtttctcaattagatgtcaacaagaaataccaatccaaggctcgagaagcgatt
aagttcatggagaaagaattccaaattggcaacaggtacttaagagcacaaaaagataaa
gagagtctacgctttgatgacaactccaaagccaagatagatgatgtaaatgtcagaacc
ttctgcagcatagccgaatgtgctcacttctttgctgttcgctccggggatccctccttg
catagccctgccaaccctaccccaggggggatggtcaccattctcacacattcggagcca
tcggacaattccagggtgacggccaccatcgacaagctcctcaacgtcggcgttgacgtc
accacagccagggatttccaagctaaatggcaggcccatacgtga
DBGET
integrated database retrieval system
