Lytechinus pictus (painted urchin): 129263542
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Entry
129263542 CDS
T09066
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129263542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129263542
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129263542
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129263542
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129263542
U7-dependent histone pre-mRNA processing factors
129263542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
Beta_lactamase3
DUF6673
Motif
Other DBs
NCBI-GeneID:
129263542
NCBI-ProteinID:
XP_054757424
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All DBs
Position
6:complement(38689767..38708472)
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AA seq
632 aa
AA seq
DB search
MDSLPYFDLIDPEEIDLLLVSHFHLDHCGGLPYFLKNTQFRGRVFMTHASKAIYRWNLSD
YVKVSNLSAERMLYTDADLQTSMDRIETVNFHQEVDLNGIRFSCFHAGHVLGACMFLIEI
AGVKILYTGDFSRQEDRHLMQAELPNIKPDILITESTYGTHIHEKREDREARFTSTVHDI
VNRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYIDAM
NEKIRRQINVSNPFVFKHISNLRGMDHFDDVGPSVVMASPGMMQSGLSRELFENWCTDRR
NGLIIAGYSVEGTMAKHVMSSPEEIQTLSGQKVPLKMSVDYISFSAHADYEQTSEFIRAL
KPPQIVLVHGEANEMSRLKAAILREYEDDDEYNIQVHNPRTTQAVELYFRGEKMAKVMGS
LAAQRPRHNSKISGILVKRNFNYHIMAPSDLSEYTDLAVSNVTQRQSIAYHAPLSLLTHY
LTQLSTDLEYTELNDKPALRIFGEINIVHDPAARVITLEWVANAENDMYADAVMTVVVRV
ASDPDAQKFKQLPAKNDSQVFSERLMVLLRDMFGQSTVTNFADSDDLLVCMDGKEAQVNI
ESLEVKSEDKQLKSMVTTAMKRLHEAIDPVPT
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggactctctaccttactttgatctcatcgaccctgaagagatagaccttcttcttgtt
agccactttcacttagaccactgtggaggtttgccatattttctaaagaacactcagttt
cgtggacgagttttcatgacccatgcaagcaaagctatttacagatggaatctctcggat
tatgtcaaagtcagtaacctatcagcagagcgtatgctgtataccgatgcagacctccag
acgagcatggaccggatcgaaacagttaatttccaccaggaagtcgatctaaatgggata
cgtttctcatgttttcatgccggtcatgtcctgggggcctgtatgttcctgatagagatt
gctggcgtcaagatactgtatacgggtgatttctcacgccaagaggaccggcatctgatg
caagcagagttgcccaatatcaaaccagatattctcattacggaatccacctacggcact
cacatacatgagaaacgggaagaccgagaggcgcgattcacaagcacagtccatgacata
gtcaacagaggagggcgctgtttaatacccgtctttgccttggggcgagcgcaggagctt
ctcctgattcttgatgagtattggtcaaatcaccctgagcttcatgacattccaatctac
tacgcctcatctctggctaagaagtgcatggccgtctaccaaacatatatagatgctatg
aatgagaagatacgacgacagatcaatgttagcaatccatttgtattcaagcacatttca
aacctgcgtgggatggaccactttgatgacgttgggccgtccgttgtcatggcgagccca
ggtatgatgcagtcaggcctgtcgagggagttgttcgagaactggtgcacggaccggcgc
aacggtctcattatcgcgggttatagtgtggaaggcactatggcaaagcatgtgatgtca
tcgcccgaggagatccagactcttagcggtcagaaggttccactgaagatgtccgttgac
tacatctcattctctgctcacgctgattatgaacagacatcagagtttatcagagctctt
aaacctcctcagattgttctggtccatggtgaagcaaatgagatgagtagattgaaagct
gctattttgagagaatacgaggatgacgacgagtataacatccaggtccataaccctcgc
acaacccaagctgttgaactctacttcaggggagagaaaatggcaaaggtgatgggtagc
cttgcagctcagcgccctaggcacaatagcaagatatcggggatccttgtcaagaggaac
ttcaactatcacatcatggcaccgtccgacttatcagagtacacggatctagctgttagc
aacgtaacccagcgccagagcatcgcctaccatgccccgctctctcttctcacgcactac
ctcacccagttgtcgaccgacctggaatatacggagctcaacgacaagcccgctctccgt
atctttggtgaaatcaacattgtccatgacccagctgcgagggttataacattagaatgg
gtagccaatgctgagaatgacatgtacgctgatgcagtcatgacggtagtagtgagggtt
gcttccgatccagacgctcagaaattcaagcagttaccagccaaaaacgacagccaggta
ttcagcgaacgtctcatggtcctgctaagggatatgttcggtcagagtactgttacaaac
tttgctgacagtgatgatcttcttgtctgtatggacggcaaagaagcacaagtcaacatc
gaatccctggaggtgaagtctgaggataagcagctgaagtccatggtcacaactgctatg
aaaagattacatgaagcgattgaccctgttcctacctaa
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