Lytechinus pictus (painted urchin): 129263848
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Entry
129263848 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129263848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lpic03000
]
129263848
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129263848
04121 Ubiquitin system [BR:
lpic04121
]
129263848
Enzymes [BR:
lpic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129263848
Transcription factors [BR:
lpic03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129263848
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129263848
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129263848
Ubiquitin system [BR:
lpic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129263848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_2
zf-RING_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
129263848
NCBI-ProteinID:
XP_054757737
LinkDB
All DBs
Position
6:30392818..30420290
Genome browser
AA seq
803 aa
AA seq
DB search
MSTFDDPAECPLCMEPLELDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKAYPECP
ADFKPLSEEQMHRIKNEKRQKDIQRKQKITENRKHLASVRVVQKNLVFVVGLSQRLADTE
ILRKQEYFGKFGKILKVVINQNTSYAGSQSHGPSASAYVTYQRAEDSLRAIQAVNVKQLG
TTKYCSHDGRTLKVDCMYLHELGDENASFXKEDMQMGKHQEYEQKLLHDLLGGGSSHSPG
SSTTTTTTHNHTAATTASTSATTNSSSATSNAATSSGRERAKPQSNTRKKQPSPPTTQKS
NSRGSPSITTNSWPSLSKPNNAEGGDETTTQREESTIHSHTTKDTPSDIVDRTDPLPTSL
PQSSTQASNGLTTEAHENLPHPHNSAAPPIDIPQKRVITETGSLSSTPHEASPQVQSVPD
LPPPPVTDTRQQQPLSGPTGPPPNLPHPGRGAPFGDIAHLFGGNGFIPQANLQRHVPAVP
IPGMPPQNDWNNGGNWTAGSELLPVDSHTTDWQAAFGFTSDPKEKEKHNEDDLGFDPWQE
SSQGLADLLEKELQLNQPSKITQPPPGFNSHSQPFVPMHRHGRPAGRSKILPWVHSQSSP
TSEATPTGQTGPAHPPPANHVPRFPAPRSSMSAHSPHNPNPLTDNVHLKTWQDGLRALLP
NINISFGQSQQPPQSFLPEMTRVNSLQQNAAESWVGSPTGSSWAVQDPAIVSIRSTLPNS
AETSGMEGEEKPHWLESLQNLTETDSPTHTPTQQQTNRFFPADHIHNRGVSWGNHLPPPG
FNTTQIRPIAQNTAEPHTITENL
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccttcgatgacccagctgagtgcccactatgcatggaacctttggaattggac
gatgtcaatttcttcccatgcacatgcggttatcagatttgtcggttctgttggcatcgt
attcgcacagatgagaatggtttatgtcctgcatgcagaaaggcctaccctgaatgcccc
gcagacttcaaaccactctctgaggaacagatgcatcggataaagaatgaaaaaagacag
aaagatattcagcgcaagcagaagataacagaaaacagaaaacatctagccagtgtaaga
gtcgtccagaagaatcttgtttttgttgttggcttgtcacaaagattggcggacacagaa
attttgagaaagcaagaatactttgggaaatttggcaaaattctcaaagtggttataaac
cagaacacatcctatgcaggaagtcagtctcacgggcccagtgcaagtgcgtatgtaacc
taccagagggctgaggactcgttacgggcgatacaagcggtaaacgttaaacaattaggt
acaacaaaatactgcagtcacgatggtaggacgttaaaggtcgactgtatgtatttacat
gagttaggtgacgagaatgcgagcttcntgaaggaagatatgcagatgggtaaacatcaa
gagtatgaacagaagttactacatgacctgttaggaggtggtagtagtcacagtcccggt
tcctctaccacgaccacaacaacacacaaccacacagctgccaccacagcatcaacatca
gctacaactaactcatcaagtgctacaagcaatgctgcaacatcgtcgggaagggaaaga
gcaaaaccacaatctaatacaagaaaaaagcagccatcgccgcccaccacacagaagtcg
aacagtagagggagccctagcataacgacaaattcctggccatcgttaagtaaacccaac
aacgctgagggaggggatgaaacaactacacaaagagaagaatctacaatacacagccac
acaacaaaagacacaccttcagatatcgtggacagaacagaccccctgcctaccagctta
ccacagtcctcaacgcaggcctccaacggattgaccacagaggcccacgaaaaccttcca
catccgcataacagtgcggcgccccctattgatataccccagaagagagtgataacggag
accggtagcctgagcagcacgccacacgaggcttccccacaggtgcaatcagtccctgac
ctgcccccacccccagtgacagacaccaggcaacaacaacccctgtcgggtcccacagga
ccccctcctaacctgccccaccccggtagaggggccccctttggtgacatcgcccatctc
tttggaggcaacgggttcatcccccaggctaatcttcagagacacgtgccggcggtgccc
atacccggcatgccaccgcagaatgactggaacaatggtggcaattggacagctggcagt
gagcttttaccggtagacagccatacaacagactggcaagctgcttttggttttacatcg
gaccctaaagaaaaagaaaagcataatgaagatgatttaggctttgacccctggcaggaa
tctagtcaaggattagcagacttgctggagaaggagctccaactcaatcaaccttcaaag
atcacccaacctcctcctggcttcaacagtcacagtcaaccgtttgtgcccatgcataga
catggaagaccagctggaagaagtaaaattctaccatgggtccacagtcaatcttcacct
acatcagaagccacacccactggacagacaggccccgcccatcccccgccagccaatcac
gtgccaaggtttcctgcccctcgttcatcgatgtcagctcactccccgcacaacccaaat
cctttgactgataatgttcatcttaaaacctggcaggatggtctgagggcgcttcttccc
aacatcaacatcagctttggtcagtcgcaacagcctccgcagtccttcctacccgagatg
acgagagtcaatagcctacaacagaatgcagctgaatcatgggtgggttcccctaccggt
tcatcatgggcggtacaagatccagccatcgtcagcatcagaagcaccctccccaactca
gcagaaacaagtggcatggagggtgaggagaagccgcactggttagaatccctccagaac
ctgacagagacagactcccccacacacacacccacacaacaacagacaaatcgattcttc
cctgcagaccacatacacaacagaggtgtttcatggggtaaccaccttccccctccaggc
ttcaacaccacgcagattagaccgatagcacagaatacagctgaaccacacacaattaca
gaaaatttgtag
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