Lytechinus pictus (painted urchin): 129264316
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Entry
129264316 CDS
T09066
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03022
Basal transcription factors
lpic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129264316
09124 Replication and repair
03420 Nucleotide excision repair
129264316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129264316
03036 Chromosome and associated proteins [BR:
lpic03036
]
129264316
03400 DNA repair and recombination proteins [BR:
lpic03400
]
129264316
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129264316
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129264316
Chromosome and associated proteins [BR:
lpic03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
129264316
DNA repair and recombination proteins [BR:
lpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129264316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
AAA_11
SNF2-rel_dom
PspAA
RHH_6
Motif
Other DBs
NCBI-GeneID:
129264316
NCBI-ProteinID:
XP_054758148
LinkDB
All DBs
Position
7:3617167..3642471
Genome browser
AA seq
736 aa
AA seq
DB search
MYMLELKKLLDAKGHGVLEMPSGTGKTVSLLALIVAYIQANPHALTKLIYCSRTVPEIEK
AVEELRRLLDFIEEETGEKPNFVGLALSSRKNLCIHPEVSQERLGKIVDSKCHSLTASYI
RERRKHDPSVPTCSFYEEFDASGRDIPIQPGAYSLDDLKEIGREHGWCPYFLARYTISHA
NVIVYSYHYLLDPKIAEQVSKELSKQSCVVFDEAHNIDNVCIESMSVNISRKTLDKSSQN
LDSLTRHINRIKDTDAQRLREEYQRLVDGLRDASRARETDVHLSNPVLPDEVLEEAVPGN
IRTAEHFIGFLKRFVEYMKTRLRVQHVISETPASFLKDVFSKVCIERKPLRFCAERLHSL
LRTLELTDLQDNMSPLLGVASFATLVSTYTKGFSLIIEPFDDKTPTISNPVLHFSCMDAS
LAIKPVFDRFQSVVKTLSPLDMYPKILDFRPVSMASFSMTLSRSSICPIIVARGNDQVTI
SSRFESREDVAVIRNYGNLIVELSGIVPDGIVAFFTSYTYMESVVANWYEQGIIDSIQKN
KLLFIETQDAAETSIALNNYHKACENGRGAILLSVARGKVSEGIDFDHHFGRAVVMLGIP
YVYTQSRILKARLEYLRDQYQIKENDFLTFDAMRHAAQCVGRALRGKTDYGIMVFADKRY
SRADKRGKLPRWIQEYIKDSVLNLSTEEAVQISKRFLRQMAQPFKREDQLGMSLLTLEQL
ESEEMKKKLDQTVHQV
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgtacatgcttgaactgaaaaaacttctagatgcaaagggtcatggagttcttgaaatg
ccatcagggacggggaagactgtttctcttctagctctcattgtggcttacattcaggcc
aatcctcatgctcttacaaagctcatctactgctcaagaacagttccggaaattgaaaag
gcagtggaagaactgagaagactgttagatttcattgaagaggagactggggaaaagcca
aactttgttggccttgctctcagctccagaaagaacctatgcatacatcctgaggttagc
caggagagattgggtaaaatagtagacagcaagtgccattccctcacagcatcttacatc
agagagcgtcggaagcatgatccatctgtgcccacttgttccttctatgaggagtttgat
gccagtggtcgtgacatcccaatacaacctggtgcatacagtcttgatgacctaaaagag
ataggcagagagcatggatggtgcccttatttcttagccagatacacgatatctcatgcc
aacgttattgtttatagctatcactacctattggatcctaagatcgctgaacaagtctcc
aaggaactctccaagcaatcctgtgttgtctttgatgaggctcataacattgataatgtc
tgtatagagtctatgagtgtgaacatcagcagaaaaacgcttgataagagtagccaaaat
ctggattccctcaccagacatatcaatcgtatcaaagacacagatgcccagcggttgaga
gaagaataccagaggctagtagatggtctgagagatgcaagcagagcaagagagacggat
gtccatcttagtaatcctgttcttccagatgaagttttagaggaggctgtacccggcaac
atccgcactgcagagcatttcatcggtttcttgaagcggtttgtagaatacatgaagaca
agattaagggtccagcatgtcatctcagagacaccagcatcgttcctcaaagatgtcttc
tccaaagtgtgcatagaaagaaaacctctaagattctgtgcagaacgattgcattctttg
ttgcgtacattggagctaactgacctccaggataacatgtctcctctactgggtgttgca
agttttgctacgctggtcagcacttacacaaaaggtttcagcctcatcatagaaccattt
gacgataaaacacctaccatctcaaacccagtacttcacttcagttgtatggatgcttct
cttgctatcaaacctgtgttcgacaggtttcaatctgttgtcaaaaccctttcaccactg
gatatgtatcccaagattcttgattttagacctgtttcaatggcttctttctcgatgact
ctatcacgcagtagcatctgcccgataattgtagcaagaggaaatgatcaggtgactata
tcatcaaggtttgagagcagagaagatgtagctgtgatcaggaactatggcaatcttatt
gttgaactctcggggattgttcctgatggaatcgtagcgttcttcaccagctacacttac
atggagtctgtggttgcgaactggtatgaacaagggatcattgacagcatacagaagaac
aagcttctattcattgagactcaggatgctgccgagaccagtatcgcactcaacaactac
cacaaggcttgtgagaatggccgaggtgctattctgctgtctgtagcccggggcaaggtg
tccgagggaattgattttgatcatcactttgggagagcggtggtgatgcttggtatacct
tacgtctacacacagtctaggattctgaaggctcgtctggagtacctgagggatcagtac
cagatcaaagagaatgatttccttacgtttgatgcaatgaggcatgcagcacagtgtgtt
ggaagagctcttagagggaagacagattatggaatcatggtctttgctgataagagatac
tcaagagctgataagagggggaagctgcccagatggatccaggagtacatcaaagacagc
gtactcaatctatcaacagaagaggctgtgcaaatcagtaaacgattcctacgtcaaatg
gcccagcctttcaagagggaggaccaacttgggatgtctttactcactcttgaacaactt
gaatcagaagagatgaagaagaagctggaccagactgttcatcaagtctga
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