Lytechinus pictus (painted urchin): 129265140
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Entry
129265140 CDS
T09066
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03008
Ribosome biogenesis in eukaryotes
lpic03013
Nucleocytoplasmic transport
lpic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129265140
03015 mRNA surveillance pathway
129265140
03008 Ribosome biogenesis in eukaryotes
129265140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129265140
03009 Ribosome biogenesis [BR:
lpic03009
]
129265140
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129265140
mRNA cycle factors
Stress granule specific factors
129265140
Ribosome biogenesis [BR:
lpic03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
129265140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
UBA_8
UBA_4
LRR_8
LRR_9
NTF2
DUF8346
RRM_NXF1-2
Motif
Other DBs
NCBI-GeneID:
129265140
NCBI-ProteinID:
XP_054759108
LinkDB
All DBs
Position
7:54139504..54167719
Genome browser
AA seq
754 aa
AA seq
DB search
MSSFQRHGDFTVTKSTKGGGRNYYGHDDRTRETPSGHWRGGGRGGGGGGRGGGGGGGGGR
GGGRGGGNRNDWDQSDRYDRNDNFRGQGRNDYDRYNDRDGGYRGRGRGRGGGQTSGNSGG
GGSGGGGKWRGGRGGGRRDKRRGGGGGGGHRGDGAGGGMNNRDSDQVHPRSRLEDDDVSM
DDGDNPKANSRFNPYGNRKSGANQRRSQNNDRRGGSSQSSMSRLGLPFKDGSRHSGRDDE
TWCKITIPYGKKSEKEWLIKTIQGACKEPFIPQEFTYDNQNAIFYVDDLATGEALKDVST
RITTPSGYKIIIQTRPCRPPMKSVFNDKDLDLLKQVMSRRYDPSAKSLDLGNLTNDADLK
GKLFLIVERPAHFAAILKIITENIPEMTMLQLDANKLYNLKSMSDLPLKMPNITTLSLAR
NNLRSEGELDNLKGLKLKELTLDGNPLCDNFREQSTYISAVRSRFPKVEILDGSTLPPPI
NFDLEDTAPLPTMQPNFFAGDKVKAILVPFLERFFKVYDSRDRQPLLEIYHDQSSFSLSI
PLNMEPGQGKTRLSRYLREHQSRNLLVTKDPAQRNKLIKQKKVPIIAYLHDLPATQHDMN
SLRIDVSMAQGNLLCFTVSGTFKEVTSKSNDEVVIAFSRVFLASHHPTTGLCIINDQLCL
RPATNQQKSSFASPGPTPSTSPVNVPQSMPAPIPQGLGPTQQQMLAEFMRVSGMNADWSM
KCLEENNWNYEQSGTVFTSLQSEGKIPPEAFKQA
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttttcagcgtcatggagatttcacagtgacaaaatctactaaaggaggtggt
agaaattactacggacatgatgatcgcactcgagaaacaccaagtggccactggcgaggt
ggaggaagaggagggggaggtggaggaagaggaggaggaggaggaggaggaggaggaaga
ggcgggggacgaggaggaggaaacagaaatgactgggatcagagtgacagatatgaccga
aatgataacttcagaggacaaggacgcaatgactatgacagatataatgacagagatggt
ggttatagaggaaggggaaggggtagaggtggtggacaaacaagtggtaacagtggaggt
ggaggaagtggtggtggaggaaaatggagaggaggtcgtggaggtggtagaagagataaa
aggagaggaggaggaggaggaggaggtcatcgaggggatggagctggaggaggaatgaat
aatagggattcagaccaagttcatccaaggtcaagattagaagatgatgatgtatcgatg
gatgatggagacaatccaaaagcaaattcgagatttaatccatatggaaaccgtaaatct
ggagcaaaccagaggagatcacagaacaatgatagaagaggaggttcatcacaaagctct
atgtcaagactaggtttaccatttaaggatggttctaggcatagtggaagggatgacgaa
acatggtgtaaaattactataccatatgggaagaagagtgaaaaggaatggctcatcaag
actatccaaggtgcttgtaaagaaccttttataccacaagagtttacttatgataatcag
aatgcaatcttttatgtggacgatttagctactggtgaagctttgaaagatgttagcacc
agaataacaacaccaagtggatacaagatcatcattcagactcgtccatgcagaccaccc
atgaaatcagtgtttaatgataaagatcttgatctactcaaacaagttatgagcagacgt
tatgatccttctgccaaatcactagaccttgggaatctgacaaatgatgctgatttgaaa
ggaaagctgttcctcattgtagaaagaccagcccactttgctgcaatccttaaaataatt
actgaaaacattccagagatgacaatgcttcaacttgatgctaacaaactatacaatcta
aagagcatgtctgatctaccgcttaagatgccaaatatcacaacactcagcctggcacgt
aacaatttgagatctgaaggagagctagacaatctgaaaggactcaagctaaaggagttg
actctcgatggtaaccctctatgtgataacttcagagaacaatcaacatatatcagcgct
gttcgatcaagatttcccaaggtagagatcttggatggaagcacactaccccctcctatc
aactttgacctggaagacactgctccattacccactatgcaaccaaacttctttgcaggg
gacaaagtcaaagcaatcttggttccattcttggaaaggttcttcaaagtatatgattcc
cgggacagacaaccactacttgaaatctatcatgatcagtcaagtttctcattatcaata
cctttgaacatggagcctggccaagggaagacacgtcttagccgctatttgagagaacat
caaagccgtaatctacttgttacaaaggacccagctcaaaggaacaagctgataaagcag
aagaaagtacctatcatagcctaccttcatgatctaccagccactcaacatgatatgaat
tcccttaggattgatgtatcaatggcacagggaaatctactatgtttcacagtcagtggt
actttcaaagaagttaccagcaagtccaacgacgaggtagtaattgcattcagtagagta
ttcttagcttcacatcaccctactactggcctatgtattatcaatgatcaactctgccta
agaccagctactaaccaacaaaagagctcatttgctagccctggtcctacaccatctact
agtcctgtcaacgttcctcaatcaatgccagcaccaataccacaaggacttggcccaaca
cagcaacagatgcttgctgaattcatgagagtctctggtatgaatgctgattggtctatg
aagtgtctagaagagaataactggaattatgaacaatctgggacagttttcacaagttta
cagagtgaagggaagattccaccagaagcattcaagcaagcgtga
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