Lytechinus pictus (painted urchin): 129266448
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Entry
129266448 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase cgh-1-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129266448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129266448
03036 Chromosome and associated proteins [BR:
lpic03036
]
129266448
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129266448
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129266448
mRNA degradation factors
5'-3' decay
Decapping complex
129266448
Chromosome and associated proteins [BR:
lpic03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129266448
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129266448
NCBI-ProteinID:
XP_054760276
LinkDB
All DBs
Position
8:complement(42974537..42985830)
Genome browser
AA seq
522 aa
AA seq
DB search
MATAPPQLNRMMNNNHGARSPNRGQNNDSRRGDGHQGNHQGRGDRNGPHHRDGPGGYHRD
GHYGGYRGSGGYGGRQYSRQKDFERPAPKAAAPVPKPTPIDMDDPDWKEKLAIPEKDRRI
RTTDVTNTKGNEFEDYCLSRPLLMGIFEKGWEKPSPIQEESIPIALTGRDIMARAKNGTG
KTGAYTIPLLEKTNPDNNFIQALVLVPTRELALQTSQICKQLSKHTGHNVMVTTGGTSLR
DDILRLEDPVHIVIATPGRILDLMKQSIAKMDKCSVMVLDEADKLLSKDFQNMLDDIISY
LPQDRQIMLYSATFPIQVKDFMDRYLTKAYEINLMQELTLKGVSQYYAFVEEKQKVHCLN
TLFSKLQINQAIIFCNTTQRVELLAKKITELGYSCYYIHSRMQQEHRNRVFHDFRNGACR
NLVCTDLFTRGIDIQSVNVVINFDFPRVSETYLHRIGRSGRYGHMGLAINMITHDDKVSI
YDIEKELSTKIIPFPCKGKEVDKRLYVAEFQMEEEQLGDGSG
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggcaccaccacaactcaaccgcatgatgaacaacaatcacggggcaaggagc
ccgaacagggggcagaacaacgactcgaggaggggcgatggtcaccaaggaaatcaccaa
ggccggggagacaggaatggcccacatcacagagacggcccaggaggttaccacagagac
gggcattacggagggtacagggggagcgggggctatggcgggagacagtattcaagacaa
aaggatttcgagaggccagcaccaaaagcagctgcaccagtacccaagccgacaccgata
gacatggatgatccagactggaaagaaaaattagcaatcccagaaaaggacagaagaatt
agaacaacagacgtcacaaataccaaaggaaatgagtttgaggattattgcctctctcgc
cctctattgatgggcatctttgagaaaggttgggagaaaccatcgccgattcaagaagag
agcataccgattgccttgaccggacgagacatcatggctagggccaagaacgggacagga
aagactggtgcttatactatacccctcctggaaaagacaaacccagataacaatttcatt
caagctttagtcctagtaccaacgagagagctggctctccagaccagtcagatctgtaag
cagctatcaaagcatacaggacacaatgtcatggtcacaacgggaggtactagtctaaga
gacgacattctaagactcgaagatcctgtacacattgtgatagccactcctgggcgtatc
ctggatcttatgaagcaaagcattgccaagatggacaagtgcagtgtgatggtattggac
gaggctgacaagttactgtctaaagacttccagaacatgctcgatgacatcatcagttat
cttccacaagacagacaaatcatgctctactcggcaaccttcccaatccaagtaaaagac
ttcatggatcgttacttgacgaaagcatatgaaatcaacctgatgcaggaactaaccctg
aagggtgtcagtcagtattacgctttcgtggaggagaaacaaaaagttcactgccttaac
acactcttctccaagttacaaatcaaccaagcgataatcttctgcaatacgacccagcgt
gtggaactccttgccaagaaaatcacggagcttggttattcctgttactacatccactct
cgcatgcagcaggagcaccgaaacagagtattccacgacttccgcaacggcgcctgcaga
aaccttgtctgcacagacttgttcacccgtggtatcgacatccagtccgtcaacgtagtc
atcaactttgacttcccccgcgtctcggagacctacctccaccgtatcggccgttcaggg
cgctacggtcacatgggtctagcaatcaacatgatcacccacgatgacaaggtgtccatc
tatgacattgagaaggaactatccaccaagattattcctttcccgtgcaaggggaaggaa
gtcgacaagaggctctacgttgcagagttccagatggaggaggaacagctaggggatggg
tccggctag
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