Lytechinus pictus (painted urchin): 129268448
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Entry
129268448 CDS
T09066
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03022
Basal transcription factors
lpic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129268448
09124 Replication and repair
03420 Nucleotide excision repair
129268448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129268448
03400 DNA repair and recombination proteins [BR:
lpic03400
]
129268448
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129268448
DNA repair and recombination proteins [BR:
lpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129268448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Lipoprotein_16
TECR_N
Motif
Other DBs
NCBI-GeneID:
129268448
NCBI-ProteinID:
XP_054761975
LinkDB
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Position
9:complement(41397971..41411210)
Genome browser
AA seq
568 aa
AA seq
DB search
MATSSEEVLLVVSQVRSRKSNGSLYLMGKRLAWQEDNKEVFTISHYYADVKQQRISQDTS
SKVQLQILLHNGSSTKFHFANREGPAVQKQDRNDVKELLQQLLPKFRSQASRELEQKNKM
LKDDPELFQLYRDLVMSGVMTADEFWASRINMAKQENASSSSAVASTSSDGGQGVGVSAA
FLSDIKPQTDGCNGVKYNLTADIIDSIFRIYPAVRKKHLESVPHTMSEKEFWTCFFQSQY
FHRDRINAGSKDLFAECAKRDEKDMTEEANQTVKDPLLDIQGLSDRTLNEEFGFSLDNVK
HSSNAVNKSIIKRFNHHNTRVLAASESNKRSIDDVDGPSTSSQSSTPSQNSNTNHRVEGG
GDGDESTAKKARLREAIEIEDLASTSKQDGVSLRLERTDRYYHGPTVVQSTDYFSSEEVL
GALRAVQSEVMSSVPNLHKVISSNTARSVMGELTPGGALMASLSHQPVHTLYSPEIQKEV
KRLYAALAELLRHFWSCFPITNRSLEEKVFRMKGTLEQFQAKKMKPFKDTLAKQHIGLNL
MIHMEDLLQTAYKKYAQWQSKKLGAKLS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcatcggaagaagtcttactggttgtgagtcaagtccgtagcaggaagagc
aacggtagcctttatctgatgggtaaacgtctggcctggcaagaagacaacaaagaagtc
ttcactatcagccattactatgcagatgtcaagcaacagagaatcagtcaggatacgagt
tccaaagtccagcttcagatcctgcttcacaatgggtctagcactaaatttcactttgca
aaccgtgagggtccagcggtccagaagcaagaccgtaacgatgtcaaggagctactccag
cagctccttccaaagttccgcagccaagcaagtagagaactggaacagaaaaataagatg
ttgaaggatgatccggaactgtttcagctctaccgtgacctggtgatgagcggggtcatg
actgcagatgaattctgggccagtcgcatcaatatggccaagcaagagaatgcttcgtct
tcctccgctgtggcatcaacgagcagcgatggaggtcaaggggtcggtgtatcagcagcg
ttcctctctgacatcaaacctcagacggatggttgcaatggagtcaagtataacctgacg
gcagacatcattgattctatattccgtatctacccagcagtgagaaagaagcatctagag
agtgtccctcatacaatgtcagagaaagagttctggacgtgtttcttccaatctcagtac
ttccatcgagatcgtatcaatgctggaagcaaagatctctttgctgagtgtgccaagaga
gacgagaaagatatgacggaggaagcaaaccaaactgtaaaagaccctcttcttgatata
caggggttatctgacaggacactaaatgaggaattcgggttttctttggacaatgtaaag
cattcaagtaacgcagtcaataaatccatcattaaacggtttaatcatcacaacacacgg
gtattagctgcatcagaatcaaacaagagaagcatagacgacgtcgatggaccatcaacc
agctcccaatcttccacaccaagtcagaactcaaacacaaatcatcgagtggagggagga
ggggatggagacgagagcactgcaaagaaagccaggttacgagaagcgatagagattgaa
gatctagcatctacctcgaagcaagatggtgtttccttgaggcttgaaaggacagacagg
tattatcatggtccaaccgttgtccagtctactgattacttctcttcggaggaagtgctt
ggtgccttgagagctgtccagtccgaggtcatgtcttctgtgcctaatctacataaggtt
atctccagtaatacagcgaggtcagtgatgggagagctgacaccagggggcgccctaatg
gcaagcttgtcacatcaacctgttcacaccttgtatagtcctgagatccagaaagaagtg
aagaggttgtacgctgcccttgcagagcttttgaggcacttctggtcatgtttccctatc
accaatcgctctcttgaggagaaggtcttcagaatgaaaggcactctagaacagtttcag
gccaagaaaatgaaaccattcaaagatacccttgcaaaacaacatatagggcttaatttg
atgatccacatggaagatctcctgcaaactgcttacaagaaatacgctcagtggcagagt
aagaaacttggtgccaagttatcatga
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