Lytechinus pictus (painted urchin): 129270963
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Entry
129270963 CDS
T09066
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129270963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129270963
03041 Spliceosome [BR:
lpic03041
]
129270963
03009 Ribosome biogenesis [BR:
lpic03009
]
129270963
03016 Transfer RNA biogenesis [BR:
lpic03016
]
129270963
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129270963
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129270963
Spliceosome [BR:
lpic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129270963
Complex C
U4/U6.U5 tri-SnRNP related factors
129270963
Ribosome biogenesis [BR:
lpic03009
]
Eukaryotic type
Pre-60S particles
Helicases
129270963
Transfer RNA biogenesis [BR:
lpic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129270963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
129270963
NCBI-ProteinID:
XP_054764281
LinkDB
All DBs
Position
11:complement(26704106..26728724)
Genome browser
AA seq
1018 aa
AA seq
DB search
MEDAFGDDLFSVFDDGTSSKETLNSKKKSSKGPETSDGSSNKRAAESSAPSDPAEAKRPK
VSLITEELNLSEILPQVKTHDVECLEGCTHEVAIPREEEFKPLEPTTKKAAKEYPFILDP
FQKEAIKCLENNQSVLVSAHTSAGKTVCAEYAIAMSLRDKQRVIYTTPIKALSNQKYREL
FEEFQDVGLMTGDVTINPSASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDKNR
GVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYRPVPLQHYIFP
AGGDGLHLVVDEKGEFRQDNFNAAMQVLRDGGDAAKGDQRGRRGGTKGPSNIFKIVKMVM
ERSFQPVIVFSFSKKECEAYGLQVSKLDFNTQEEKTLVVEVFNNAMDCLSEEDKKLPQVE
NVLPLLKRGVGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVIFTNAR
KFDGKDFRWITSGEYIQMSGRAGRRGLDDRGIVILMIDEKMSPGVGKDILQGQPNPLNSA
FHLTYNMVMNLLRVEGINPEYMLERSFFQFQSYTAIPELFEKLRKLEEEYNAMVIPQEDS
VESYYKIRQQLKKLAKDIQGFITKPKYCLPFMQPGRMVKVKNGDDAFGWGVVVNFRRKAN
QKMNNPSDDWLSPVFSHGEMYIYLWSGICNLFKKYCDWLVDFQVVPIMLHLISEISSVRI
YLPKDLRPPDNRQSVGKSIQEVQRRFPDGLPLLDPVEDMGIKDDALKKVVEKVEAFEERM
YSHTLHSDPELEKLYGLYEKKAQLADQIREAKRELKKARTVIQMDELKCRKRVIRRMGFA
TPADVIETKGRVACEISSADELVLTEMIFNGLFNPLSAEECVTLMSCFVFEEKSKETPKL
TSQVATALRQLQDTARRIAKVSMEAKLDIDEEDYVMSFKSTLMEVVYAWASGASFSQICK
MTDTFEGSIIRCMRRLEELMKEMCHAAKAIGNTELENKFSEGIVKIKRDIVFAASLYL
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgcgttcggggacgatcttttcagtgtttttgatgatggaacatcttccaaa
gagacattaaattctaagaaaaaatcgtcaaaagggcctgagacatcagatggctcttca
aataagagagcagccgagagttcggcaccctctgacccagcggaagcaaagaggcccaaa
gtctcgctcattacagaagaactgaatttgtctgagatcctgccgcaggtgaagacccat
gatgtagaatgccttgaaggatgtacccatgaagtggccataccacgagaagaagaattc
aaaccactggaacccaccactaaaaaggctgcaaaggagtacccattcattctagatcca
tttcagaaggaggctatcaaatgtcttgaaaacaaccaatctgtgctggtttcagctcat
acctcggcaggaaagacagtttgtgcagaatatgctatagccatgtcacttagagacaaa
cagagagtgatatataccactccaatcaaagctctcagcaatcagaagtacagagaactg
tttgaagagtttcaagatgttggacttatgacaggggatgtaactatcaacccatctgcc
agttgcctcattatgacaacagaaattttacgtagcatgttatatcgagggtcagaaatc
atgagggaagtcggctgggtcatttttgacgagattcattatatgagagacaagaatcga
ggtgtagtttgggaagagaccattattctgcttcccgacaatgtccactatgtgttcctc
tctgctaccattcctaatgctaaacagtttgcagaatggatctgtcatcttcacaaacag
ccatgtcatgtggtgtacacagagtaccgtcctgtaccattgcagcattacatcttcccg
gccggaggggatggacttcatctggtggtcgatgaaaagggtgagtttcgtcaagataac
ttcaatgctgccatgcaggttctgcgagacggaggagatgctgccaagggcgaccagaga
gggcgtcgtggaggcacaaaaggaccttcaaacatctttaagattgtgaagatggtgatg
gagagaagctttcagcctgtcatcgtcttcagcttcagcaagaaggaatgcgaggcgtac
ggccttcaggtctccaagcttgacttcaacacacaggaggagaagacactggtggtggag
gtctttaacaacgcaatggactgtctttcagaagaagataagaaacttcctcaggttgag
aacgtcttacccctcctgaagagaggagtcgggatacaccactctggtctgcttcctatc
ctcaaggagaccattgagatactgttctctgaaggcctcatcaaggccctcttcgctacg
gagaccttcgccatgggtctcaacatgcctgccaggacggtcatcttcaccaacgcacgc
aagtttgatggcaaggatttcagatggattacatccggtgagtacatacagatgagtggg
cgtgcaggaaggcgtggtttggatgacaggggtatcgtcatcctcatgatagatgagaag
atgagtcccggtgtaggcaaggacattctacagggtcagccgaatccactgaacagtgcc
tttcatctgacttataacatggtgatgaatctgctgagggttgaaggcatcaaccctgag
tacatgctggagagatcattctttcagttccagagctatacagccattccagaactcttt
gagaaacttcggaagctggaggaggagtataacgccatggtgataccccaggaggacagc
gtagagtcttattacaagatcagacaacagctgaagaagcttgccaaagacatccagggg
ttcatcacaaaaccaaaatactgtctccccttcatgcaaccaggcaggatggtgaaggtg
aagaatggggacgatgcctttggctggggtgttgtggtgaacttcaggaggaaagcaaac
caaaagatgaacaatcccagcgatgattggttatcacctgttttctctcatggggaaatg
tacatttatctgtggagtggtatttgtaacctttttaaaaaatactgtgattggttggtt
gattttcaggttgtacccataatgcttcacctgatcagtgagattagcagtgtccgaatc
tacctacccaaagacttgaggccaccagacaatagacagagtgtaggcaaatcaatacag
gaggtccagagaagatttccagatggcctccctcttttagatcctgtggaggacatgggt
attaaagatgatgcactcaagaaagtggtagagaaagtagaggcttttgaagagaggatg
tactcacatacactgcattctgacccagagttggagaagctttacggtctctatgagaag
aaagcacagcttgcagatcagatacgagaagcaaagcgagagctgaagaaagccaggacc
gtgattcagatggacgaactgaaatgtaggaagagagtgatcagaaggatgggttttgca
acgccggctgatgtcatcgagacgaaggggcgtgtcgcttgtgagattagcagtgctgat
gaactggtgttgacagagatgattttcaatggtctgtttaaccctctgagtgccgaggag
tgtgttacactcatgagctgctttgtatttgaagagaagagcaaggagaccccaaaactc
accagtcaggttgctacagctctcagacaactccaggacaccgctcgtaggatagccaag
gtcagcatggaagccaagctggacattgacgaggaggactacgtcatgtccttcaagtcc
accctgatggaggttgtctatgcctgggcgtcgggggcgtccttctctcagatctgtaag
atgaccgatacctttgagggcagtataatccgttgtatgagacgtctggaggagctcatg
aaggagatgtgtcacgctgctaaggccatcgggaacacagaactggagaacaagttttct
gaaggaatcgtcaagatcaagcgtgacatagtctttgctgcgagtctctacttataa
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