Lytechinus pictus (painted urchin): 129271082
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Entry
129271082 CDS
T09066
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129271082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129271082
03012 Translation factors [BR:
lpic03012
]
129271082
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129271082
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129271082
Translation factors [BR:
lpic03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129271082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
ATPase
AAA_19
AAA_22
Cas3-like_C_2
NACHT
ABC_tran
Motif
Other DBs
NCBI-GeneID:
129271082
NCBI-ProteinID:
XP_054764412
LinkDB
All DBs
Position
11:complement(33949748..33972666)
Genome browser
AA seq
1024 aa
AA seq
DB search
MSDRGRGGGPRGRGYGGRGRGRGGGGGRGGGGGRGGRGGPPHPPGLTGREIGMWYAQRGR
GNKQRRELRERGTVSLNDEQERQIKRMLREVEGLRENTPQSNAQPQPKMMRPADVVCQNF
YGHGLMQDPNLDQQLQEDMIKKEKSEQYRKMQTFRQKLPSFKMKDELLSLIRSNQVVVIS
GETGCGKTTQVPQFILDDYINRGQGSTCRVICTQPRRISAITVAERVAAERAERCGRDNS
VGYQIRLENAFPRPQGCILYCTTGILLKWLEGDKYLKSVSHIVLDEVHERDLLCDFLLII
LKELLPKRSDLKLILMSATLRAELFSDYFNKAPMINIPGFTFGVTEYYLEDILEMTRYQP
PRPKTTRNEPVWVKYKKGKKNREEEMEKEEQDRKKFNEYLESMRGTYSEQVVDCLSNMNH
DVIDLDLTAELLRYISLQKPDGAILVFLPGWDQISKLHDKLTSQTLFSSDRFVIIPLHSM
MPTLNQKQVFERPPQGVRKIIIATNIAETSITIDDVVYVVNIGRVKETNFDFTNNIRTMK
AEWVSKASAHQRRGRAGRVQDGICYHVYTQLKASEMEEYQVPEIKRTPLEELCLNIKTLK
LGGVHPFISKAMEAPDIRAIQLAIQSLKQMRAFDDNEELTALGYHLSRLPVEPRIGKMLV
FGAMFCCLDPILTVAASLSWKDPFYIPLGKEALADERRRILSNNTRSDHLMLCNAMNGWE
EAKENREEGSYCWRNFMSSNILSMLSKMKGQFCDVLHHMRFVSNRSPKHIDANRNSENEQ
LVKAVLCAGLYPKVAHIDKSGPSRNPARRRPPKLSTQEDGRVQIHPKSVNAQETTFSSKW
LLYHVKIKSTNVFLHDTTMVEPYPLIFCGGKISWDDDLGHETVFVDDHIKFHCSQETADL
VIKLREELDRVMEQKITNPGPTNWSQSSHEGRVMRAIVDIFVMQSRDTYEDNDDNQGFVH
GNMRNERRYGDDDDEDDNDWFDNDRAGGGRPQGGSRNNDGRSGNSHWRPHSQQRRHQGNH
HQSY
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagaggaagaggaggaggaccaagagggcgtggctatggaggaagaggtaga
ggacgaggtgggggtggaggacgaggcggaggaggaggacgaggtggaagaggagggcca
ccacatccaccgggtctgacaggcagagagatagggatgtggtatgctcagagaggtcgg
ggcaataaacaaagacgagagctgagagagagagggactgtgagcctgaatgatgaacag
gagaggcagatcaaacggatgcttcgtgaggtagaaggtctcagagaaaatacacctcaa
tctaatgcccagccacagcctaaaatgatgagaccagcagatgttgtgtgtcaaaacttc
tatggccatggactgatgcaagatcccaatctagaccaacagctgcaagaagatatgatc
aagaaggaaaaaagtgaacagtacaggaaaatgcagaccttcagacaaaaacttccctca
ttcaaaatgaaagacgagctattatctctcatcagaagcaaccaggttgtagtaatcagt
ggagagacagggtgcgggaaaactacccaagttccacagttcatcctggatgactacatc
aacagaggtcaagggtcaacatgccgtgtcatctgcacgcaaccaagaaggataagtgca
attacagttgctgagagagttgcagctgagagagcggagaggtgtggtcgggataacagt
gttgggtatcagatacgactagagaatgccttcccacgcccacagggatgtatcctatac
tgcacaacaggcatacttctcaagtggcttgaaggagacaagtatttgaagagtgttagc
catattgtattagatgaagtccacgagagagatctactttgtgattttctgctcatcatc
ctcaaagagcttctaccaaagaggagtgacctgaaattgatactgatgagtgccactctg
agagcggagttgttctctgactactttaacaaagcccctatgataaacattcctggattt
acattcggtgtcacagaatactaccttgaagatattctagaaatgactaggtatcaacct
ccaagaccaaaaacaacccgcaatgaaccggtatgggtgaagtacaagaaaggaaagaag
aatcgggaggaagagatggagaaagaagaacaggatcgcaagaagttcaatgagtacctt
gagtcaatgaggggaacgtactccgagcaagtggtggattgtctttctaacatgaatcat
gatgtcatagatctcgacctcactgctgaactacttcgatacatctcgctccagaaacca
gatggtgccattcttgtctttctgcctggatgggatcaaatcagtaaactccatgacaaa
ctaacatctcaaaccctcttctcaagtgacaggtttgtcatcattcctttgcattccatg
atgcctaccctcaaccaaaaacaggtatttgaacgtccgcctcaaggagtacgtaagatc
atcattgcaaccaacattgcagagacaagcatcaccatcgatgatgtggtgtatgtggtc
aacatagggcgggtgaaggagaccaactttgatttcacaaataatatcaggacgatgaag
gctgaatgggtcagcaaggcatctgcccatcagaggagaggacgagctgggagagtacag
gatggaatatgctaccatgtgtatacccaactaaaggcatctgaaatggaggaataccaa
gtgcctgaaatcaagagaactccccttgaagaactctgtctaaacatcaagaccctgaag
cttggaggtgttcatcccttcatcagcaaagcaatggaagcaccagacatcagagctatc
cagctagcaatccagagcctcaaacaaatgagagcctttgatgataacgaggaactgaca
gctttaggttaccatctatcccgtctccctgtggagcctcgtattggtaagatgctggtg
tttggtgccatgttctgctgcctagatcccatcctcaccgtagcagcatcactcagctgg
aaagatccattttacattcctctggggaaggaggccctcgctgacgagaggcgacggatt
ctctctaacaacacacggagtgatcatctgatgttatgtaatgctatgaatggatgggag
gaagctaaggagaacagagaggaaggatcttactgctggcggaacttcatgtcttccaat
atcctcagtatgctgagtaagatgaagggtcagttctgtgatgtcctgcatcatatgagg
ttcgtctccaacaggtcaccaaaacacattgatgccaatcgaaattcagagaacgaacaa
ctcgtgaaggcagtgctgtgtgccggtctatacccaaaggttgctcacatagacaaatct
ggaccttctcggaatccagctcggcggagaccacctaaactaagcacccaagaggatggt
cgagttcaaatccacccaaagtcggtcaatgcccaggaaacaacctttagcagtaaatgg
ttgctctaccatgtcaagattaaatctacaaatgtctttcttcatgatacaacaatggtt
gagccttatcccttgatcttctgtggtggcaaaatctcttgggacgatgacctgggacat
gaaacagtctttgttgatgaccacatcaagttccattgctctcaagaaacggcagatctt
gtcattaaattacgtgaggagcttgacagagtcatggagcagaagatcacgaaccctgga
cccacaaactggagtcagtctagccatgaaggcagggtcatgagggccattgttgacatc
tttgtcatgcagtccagagatacatatgaggataatgacgacaatcagggatttgtacat
ggcaacatgaggaatgaaaggcgttatggagatgatgatgatgaggatgataatgactgg
tttgataatgacagggctggtggaggaaggccacagggagggtccaggaacaatgatggc
aggtctgggaacagccactggagacctcactcgcagcagagaagacatcagggaaatcat
caccagagttactga
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