Lytechinus pictus (painted urchin): 129272737
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Entry
129272737 CDS
T09066
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03020
RNA polymerase
lpic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129272737
09124 Replication and repair
03420 Nucleotide excision repair
129272737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129272737
03400 DNA repair and recombination proteins [BR:
lpic03400
]
129272737
Enzymes [BR:
lpic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129272737
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129272737
DNA repair and recombination proteins [BR:
lpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129272737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Metal_CEHH
Motif
Other DBs
NCBI-GeneID:
129272737
NCBI-ProteinID:
XP_054765819
LinkDB
All DBs
Position
12:complement(39279168..39299001)
Genome browser
AA seq
748 aa
AA seq
DB search
MDTTPETAVKENINGAWKGFEPKTSGLLDQRLRPLNHWSANVLNRLTFVSTLSHLRRLNS
PVGRDGKLARPRQLHNTQWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE
WSMENLEEIAPSAINEATKIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDI
REREIRIFTDAGRICRPLLIVENQKLLLKKRHVSMLKEREYNNYSWQDLVASGVVEYIDT
MEEETVMLAMTPDDLQEKGMGYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA
MGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTTRSMEYLRFRELPAGINSVVAIASYTG
YNQEDSVILNASAIDRGFFRSVFYRSYKDSESKSVDKDELFEKPSRETCQGMRNAVYDKL
EEDGIIPPGTRVSGDDVIIGKTCTLPENEDELEGTSRRFTKRDCSTFMRSSETGIIDQVM
VSINQDGYKFCKIKVRSVRTPQIGDKFASRHGQKGTCGIKYRVEDMPFTCEGITPDIIIN
PHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDSVNVQKISNLLHEYGYHQRGNEVL
FCGFTGRKISTQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGE
MERDCQISHGAAQFLRERLFEVSDPYRVHVCNFCGLMAIANLRNNTFECRGCKNKTQISQ
VRLPYACKLLFQELMSMCIAPRMMVLPA
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggatacaacacctgaaactgctgtgaaagaaaatatcaatggagcatggaagggattt
gaacccaagacctctggtttactagaccaacgtcttagaccactcaaccattggagtgcc
aatgtgttgaatagattaacgttcgtatccactctctcgcatctgcggcgactcaactct
cctgttggacgtgatggaaagttagcccgccctcgtcagcttcacaacacacagtggggt
atggtgtgccctgcagagaccccagagggccatgctgtaggtctggtaaagaaccttgcc
ttgatggcctacatctctgtgggatcacaacccagtcctatcctggaattcttagaggag
tggagcatggaaaacttggaagaaatagctccctctgccatcaacgaagcaaccaagatc
tttgtaaatggctgctgggttggcattcatagagaccccgaacagctgatgaataccctg
aagaaacttcgtagacaaatggatatcattgtatcagaagtatccatggtaagagacatc
agggagagagagatccgcatcttcactgacgctggcaggatatgtcgccctctcttgatc
gtcgagaaccagaagttgttgctcaagaaacgccatgttagcatgctgaaagagagagaa
tacaacaattacagttggcaggatctagtggctagcggtgtggtggagtacatcgacacc
atggaggaggagactgtcatgttggcgatgacacccgatgatcttcaggagaaaggcatg
gggtactgttcaacctacacccattgtgagattcatccatccatgatcttgggcgtctgc
gcttctatcattccattccctgatcacaatcagtctccccgtaacacctaccagtctgct
atgggtaagcaagcgatgggtgtctacatcaccaactatcacgtacgtatggataccctg
gcccacgtgctatactatccccagaagcccctcaccaccacccgatccatggagtacctt
cgcttcagggaactgcctgctgggatcaactcggtggttgccattgcctcctatacagga
tacaaccaggaagattctgtcatcctgaatgccagcgccatcgatagaggcttcttcaga
tctgttttctatcggtcttacaaagattctgaatccaagtcggttgacaaagatgagctg
tttgagaaaccatctagggaaacgtgccaaggaatgcggaatgcagtttatgacaagcta
gaagaagatggaatcattcctccaggtaccagggtgtctggtgatgatgtcatcattggc
aagacatgcaccctaccggaaaatgaagatgagcttgaaggtacgagtcgacgcttcacc
aagcgagattgcagtactttcatgagatctagtgagactggcatcattgatcaggtcatg
gttagcatcaatcaagatggctacaagttctgtaagatcaaggtaagatctgtgagaaca
cctcaaataggagataagtttgccagtcgtcacggtcagaaaggaacatgtggaatcaag
tatagagtagaggatatgccattcacctgtgagggtatcactccagacatcatcatcaac
ccccacgctatcccatcccgtatgaccatcggtcatttaatcgagtgtctacagggtaag
gtgtcgtccaacaagggtgagatcggagatgccacgcccttcaacgactccgtcaacgtc
cagaagatctcaaatctcctccatgagtatggctaccaccaaagaggaaatgaggttctc
ttctgtgggttcaccggacgtaagatcagcacacagatcttccttggtcccacctattac
caacgattgaagcatatggttgatgacaagatacactccagagccagaggacctgtacag
atcctgaacagacagcccatggaaggaagatcacgtgatggcggtcttcgattcggtgag
atggaacgtgattgccagatctcccatggtgccgctcagttcctgcgcgaacgtctgttt
gaggtttcagatccttatcgggttcacgtctgtaatttctgtggtctcatggccattgcc
aatttgaggaacaacacctttgaatgcagagggtgcaagaacaagacacagatctctcaa
gtccgtttgccctacgcctgcaagcttctcttccaagagctcatgtcaatgtgcatcgcc
cctcgcatgatggtccttcctgcataa
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