Lytechinus pictus (painted urchin): 129272745
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Entry
129272745 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129272745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129272745
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129272745
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
129272745
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
GlnR_1st
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
129272745
NCBI-ProteinID:
XP_054765827
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All DBs
Position
12:<39758572..39765285
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AA seq
189 aa
AA seq
DB search
CAGERLGSESEYHIGPGTYRKNGFIYASLAGHVCSRKEAESVLPELTVLQQEIQITVPRQ
KSLVTCKVVSITSKFCRCDILSVEGVPLTETFRGMIRKEDIRATEKDKVEXYKSFRPGDI
CFARVLSLGDAQSYLLTTAENELGVVLAKSEAGVPMVPTSWCEMTCPKTHDKQLRKVAKV
QPQYIAYAS
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
tgtgcaggtgaacgccttggcagtgaaagtgaatatcatatcggccctggtacctataga
aaaaatggcttcatctatgccagtctagcgggacatgtttgctccagaaaagaggctgag
agtgtgttaccagagttgacagttctgcagcaggaaattcaaattacagtaccaagacag
aaatctttagtcacatgcaaggtggtgagtatcacatcaaagttctgccgttgtgatatc
ctgagtgtagagggcgtcccattgacagagacttttcgaggaatgattcgtaaagaagat
atccgtgctacagagaaagataaggtggagnngtacaagtcattcaggcctggtgatatt
tgttttgcgagagttctttcattaggtgatgcccagtcttatctcttgactacagcagaa
aatgaacttggtgttgtgcttgccaagagtgaagcaggtgttcccatggttcctacgagt
tggtgtgagatgacatgtccaaagactcatgacaaacaactccgcaaagtcgcaaaagtt
caaccacagtacattgcttacgccagctag
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