Lytechinus pictus (painted urchin): 129272795
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Entry
129272795 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03020
RNA polymerase
lpic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129272795
09124 Replication and repair
03420 Nucleotide excision repair
129272795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129272795
03400 DNA repair and recombination proteins [BR:
lpic03400
]
129272795
Enzymes [BR:
lpic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129272795
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129272795
DNA repair and recombination proteins [BR:
lpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129272795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
129272795
NCBI-ProteinID:
XP_054765876
LinkDB
All DBs
Position
12:complement(39317314..39352204)
Genome browser
AA seq
1175 aa
AA seq
DB search
MYDQDEEVYGEEETDDLTPDQWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPAVDLQAEAQHLTTEQEVPTRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTY
SAPLYVDITKTVLKDGEDPQETIHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMSTNSVYVFAKKDSKYAFTAECRSCLEHSSRPTSTLWVHMM
AKGGQGARKSAIGQRMISVLPYIRQEVPIMVVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQSVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYCVHRLLLATIGRREVDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQ
KFIDKGKDFNMELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFVSTLS
HLRRLNSPVGRDGKLARPRQLHNTQWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAINEATKIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSE
VSMVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKRHVSMLKEREYNNYSWQDLVASG
VVEYIDTMEEETVMLAMTPDDLQEKGMGYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTTRSMEYLRFRELPAGINSVV
AIASYTGYNQEDSVILNASAIDRGFFRSVFYRSYKDSESKSVDKDELFEKPSRETCQGMR
NAVYDKLEEDGIIPPGTRVSGDDVIIGKTCTLPENEDELEGTSRRFTKRDCSTFMRSSET
GIIDQVMVSINQDGYKFCKIKVRSVRTPQIGDKFASRHGQKGTCGIKYRVEDMPFTCEGI
TPDIIINPTLIPSRMTIGHLIECLQGKVSPNKGEIGDATLFNDWANAQKISNLLHEYGYH
QRGNEVLFCGFTGRKISTQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRD
GGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNFCGLMAIANLRNNTFECRGCK
NKTQISQVRLPYACKLLFQELMSMCIAPRMMVLPA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaagatgaagaagtttatggtgaggaggagactgatgacctgacccccgat
cagtggcaggaggcctgctggatcgtcatcagctcttactttgatgagaagggtctcgtc
cgtcagcagctggactccttcgatgagttcatccagatgtcggttcagagaatcgtggag
gactcaccagctgttgatctgcaggccgaggctcagcatttaaccacggaacaagaagtg
cctacaagataccttctgaagttcgagcagatctatctctccaagccaactcattgggag
aaggatggctcaccgagtcctatgatgccaaatgaagctcgtctcagaaatctcacgtat
tctgctccattgtatgttgacatcacaaagacagtactcaaggatggagaggatccacaa
gaaactatccatcagaaaaccttcattgggaagattcccatcatgcttcgctcgacatac
tgcctcctcaatggactcacagatcgtgatctgacagaattgaacgagtgtcccctcgat
cccggaggctacttcatcatcaatggctctgagaaggttctcatcgcccaagagaagatg
tccaccaactcggtgtatgtctttgccaagaaagactccaagtatgccttcactgcagag
tgcagatcatgccttgagcattcatcacgtcctaccagtaccctctgggttcatatgatg
gccaagggaggccagggtgctaggaagagtgcgattggtcagaggatgatatcagtacta
ccttacatcagacaggaagtacccatcatggtggtcttcagagctctgggattcgtggct
gatcgtgacatccttgaacacatcatctatgactttgatgatccagaaatgatggaaatg
gtcaaaccttctttggacgaggcatttgtcatccaggagcagagtgttgctctgaacttc
attggagcccgtggagcgcgacccggtgtcaccaaggaaagacgtatcaagtacgctagg
gagatcctgcagaaagaaatgttgcctcatgttggtgtcagcgacttctgtgaaaccaag
aaagcatacttccttggatattgtgtacatagattactcctggctactattggtcgtcgg
gaggtagatgatcgtgatcactatggtaacaagcgattggatctcgctggtccactccta
gccttcctcttcagagggctcttcaagaatcttctcaaagaagtccgcatgtacgctcag
aaattcattgacaagggcaaggacttcaacatggagcttgccattaagactaggatcatc
acagatggtctcaagtattccttggccaccggtaattggggagaccagaagaaggcccat
caggccagggctggtgtttcacaggtgttgaatagattaacgttcgtatccactctctcg
catctgcggcgactcaactctcctgttggacgtgatggaaagttagcccgccctcgtcag
cttcacaacacacagtggggtatggtgtgccctgcagagaccccagagggccatgctgta
ggtctggtaaagaacctggccttgatggcctacatctctgtgggatcacaacccagtcct
atcctggaattcttggaggagtggagcatggaaaacttggaagaaatagccccctctgcc
atcaacgaagcaaccaagatctttgtgaatggctgctgggttggtatccatagagacccc
gaacagttgatgaataccctgaagaaacttcgtagacagatggatatcattgtatcagag
gtatccatggtaagagacatcagggagagagagatccgcatcttcactgacgctggcagg
atatgtcgccctctcttgatcgtcgagaaccagaagttgttgctcaagaaacgccatgtt
agcatgctgaaagagagagaatacaacaattacagttggcaggatctagtggctagcggt
gtggtggagtacatcgacaccatggaggaggagactgtcatgttggcgatgacacccgat
gatcttcaggagaaaggcatggggtactgttcaacctacacccattgtgagattcatcca
tccatgatcttgggcgtctgcgcttctatcattccattccctgatcacaatcagtctccc
cgtaacacctaccagtctgctatgggtaagcaagcaatgggtgtctacatcaccaactat
cacgtacgtatggataccctggcccacgtgctatactacccccagaagcccctcaccacc
acccgatccatggagtaccttcgcttcagggaactgcctgctgggatcaactcggtggtt
gccattgcctcctatacaggatacaaccaggaagattctgtcatcctgaatgccagcgcc
atcgatagaggcttcttcagatctgttttctatcggtcttacaaagattctgaatccaag
tcggttgacaaagatgagctgtttgagaaaccatctcgggaaacgtgccaaggaatgcga
aatgcagtttatgacaagctagaagaagatggaatcattcctccaggtaccagggtgtct
ggtgatgatgtcatcattggcaagacatgcaccctaccggaaaatgaagatgagcttgaa
ggtacgagtcgacgcttcaccaagcgagattgcagtactttcatgagatctagtgagact
ggcatcattgatcaggtcatggttagcataaatcaagatggctacaagttctgtaagatc
aaggtaagatctgtgagaacacctcagataggagataagtttgccagtcgtcacggtcag
aaaggaacatgtggaatcaagtatagagtagaggatatgccattcacctgtgagggtatc
actccagacatcatcatcaaccccacgcttatcccatcccgtatgaccatcggtcattta
atcgagtgtctacagggtaaggtgtcgcccaacaagggtgagatcggagatgccacgctt
ttcaacgattgggccaacgcccagaagatctcaaatctcctccatgagtatggctaccac
caaagaggaaatgaggttctcttctgtgggttcaccggacgtaagatcagcacacagatc
ttccttggtcccacctattaccaacgattgaagcatatggttgatgacaagatacactca
agagccagaggacctgtacagatcctcaacagacagcccatggaaggaagatcacgtgat
ggcggtcttcgattcggtgagatggaacgtgattgccagatctcccatggtgctgctcag
ttcctgcgtgaacgtctgtttgaggtttcagatccttatcgggttcacgtctgtaatttc
tgtggtctcatggccattgccaatttgaggaacaacaccttcgagtgcagaggatgcaag
aacaagacacagatctctcaagtccgtttgccctacgcctgcaagcttctcttccaagag
ctcatgtcaatgtgtatcgcccctcgcatgatggtccttcctgcataa
DBGET
integrated database retrieval system
