Lytechinus pictus (painted urchin): 129272799
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Entry
129272799 CDS
T09066
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129272799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129272799
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129272799
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
129272799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
GlnR_1st
Motif
Other DBs
NCBI-GeneID:
129272799
NCBI-ProteinID:
XP_054765878
LinkDB
All DBs
Position
12:39705159..39722607
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AA seq
215 aa
AA seq
DB search
MAAHSEHQRDVDHEEIKKFRDHHRICIPGERLGSESEYHIGPGTYRKNGFIYASLAGHVC
SRKEAESVLPELTVLQQEIQITVPRQKSLVTCKVVSITSKFCRCDILSVEGVPLTETFRG
MIRKEDIRATEKDKVEVYKSFRPGDIVLARVLSLGDAQSYLLTTAENELGVVLAKSEAGV
PMVPTSWCEMTCPKTHDKQLRKVAKVQPQYIAYAS
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atggcagcccacagtgaacaccaacgagatgtggaccatgaggaaattaaaaagtttagg
gatcatcatcgaatctgtattcctggtgaacgccttggcagtgaaagtgaatatcatatc
ggccctggtacctatagaaaaaatggcttcatctatgccagtctagcgggacatgtttgc
tccagaaaagaggctgagagtgtgttaccagagttgacagttctgcagcaggaaattcaa
attacagtaccaagacagaaatctttagtcacatgcaaggtggtgagtatcacatcaaag
ttctgccgttgtgatatcctgagtgtagagggcgtcccattgacagagacttttcgagga
atgattcgtaaagaagatatccgtgctacagagaaagataaggtggaggtatacaagtca
ttcaggcctggtgatattgtccttgcgagagttctttcattaggagatgcccagtcgtat
ctattgactacagcagaaaatgaacttggtgttgtgcttgccaagagtgaagcaggtgtt
cccatggttcctacgagctggtgtgagatgacatgtccaaagactcatgacaaacaactc
cgcaaagtcgcaaaagttcaaccacagtacattgcttacgccagctag
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