KEGG   Lytechinus pictus (painted urchin): 129273065
Entry
129273065         CDS       T09066                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
lpic  Lytechinus pictus (painted urchin)
Pathway
lpic03013  Nucleocytoplasmic transport
lpic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lpic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129273065
  09122 Translation
   03013 Nucleocytoplasmic transport
    129273065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lpic03019]
    129273065
   03041 Spliceosome [BR:lpic03041]
    129273065
Messenger RNA biogenesis [BR:lpic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     129273065
Spliceosome [BR:lpic03041]
 Complex C
  Other components
   EJC/TREX
    129273065
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129273065
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A Beta-prop_HPS5 WD40_RFWD3 WD40_MABP1-WDR62_1st DSE1_N Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N NBCH_WD40 PAC11 Tricorn_2nd B-prop_COPA_B_2nd RMC1_N CFAP251_N Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_ACSF4 WDR90_beta-prop_4th Beta-prop_SPT8 TRM82_WD Beta-prop_DCAF12 Cytochrom_D1 Beta-prop_WDR41 Beta-prop_ELP1_1st Beta-prop_NUP159_NUP214 PROPPIN Beta-prop_DCAF4 WD40_like
Other DBs
NCBI-GeneID: 129273065
NCBI-ProteinID: XP_054766090
LinkDB
Position
12:complement(30944326..30952689)
AA seq 321 aa
MAASTENMIKKHFEKNCRTKEHNGVHSSKVHSVAWNCDGTMLASGSFDRNVCVFSLDRDR
MTREATYKGHVGSVDQLCWHPRNPDVFVTASGDKTIRIWDTRSAKSISTIATKGENINIC
WSPNEQYIAVGNKDDLVTFVDARSNRIISEEQFKYEVNEISWNNDSDLFFLTNGHGHINI
LSFPDLKPLQELSAHPANCICIEFDPTGRYFATGSADALVSLWDVAELVCVRTFSRLDWP
VRALSFSHDGQLLASASEDLIIDVAHVETGEKVTEVHCESPTFTVAWHPKRYLLAFACDD
KDKYNRERDAGSIKLFGLPSD
NT seq 966 nt   +upstreamnt  +downstreamnt
atggcagcttccacagaaaacatgattaaaaaacatttcgagaagaattgtcgaacaaaa
gaacataatggggttcactcatcgaaagttcactctgtagcatggaattgtgatggcact
atgcttgcatccggatcgtttgatagaaatgtttgtgtcttttcgctggatagagatagg
atgaccagagaagcaacgtacaagggtcatgtcggcagtgtggatcagttgtgctggcat
cccagaaatccagatgtgtttgtgaccgcatcgggagacaagacgatcaggatatgggat
accaggtctgccaagtctatatcaactatagctacaaagggtgagaacatcaacatttgc
tggagtcctaacgagcagtacattgccgtcggcaacaaggatgaccttgtgacctttgta
gatgctagatctaatcgtatcatcagcgaggaacaattcaagtatgaagtgaatgagatc
tcctggaacaacgacagtgatctcttcttcttaaccaatgggcatggtcacataaacatc
ctaagctttccagacctgaaacctctgcaggaactcagtgctcacccagccaactgcata
tgcattgagtttgatccaacgggaaggtactttgccactggaagtgccgatgccctggtg
agcctttgggatgttgccgagctggtttgtgtcaggaccttctcaaggttagactggcct
gtgcgtgccttgagcttcagccacgatgggcagctcttggcctctgcctctgaagatctc
atcatagatgtcgctcatgtcgaaacaggtgaaaaggtaacagaagtccactgcgaatcg
ccgaccttcactgtggcctggcaccccaagaggtacctgcttgcattcgcttgtgacgac
aaggacaagtataacagagagagggatgcaggtagcatcaaactgtttggattacccagt
gattga

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