Lytechinus pictus (painted urchin): 129273336
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Entry
129273336 CDS
T09066
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129273336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lpic03041
]
129273336
03009 Ribosome biogenesis [BR:
lpic03009
]
129273336
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129273336
Spliceosome [BR:
lpic03041
]
Complex A
U2 snRNP components
U2 related factors
129273336
Complex B
129273336
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
129273336
Ribosome biogenesis [BR:
lpic03009
]
Eukaryotic type
90S particles
Helicases
129273336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
AAA_7
SRP54
ABC_tran
NB-ARC
TsaE
Flavi_DEAD
AAA
PhoH
T2SSE
AAA_25
AAA_29
Motif
Other DBs
NCBI-GeneID:
129273336
NCBI-ProteinID:
XP_054766334
LinkDB
All DBs
Position
12:complement(2015006..2027778)
Genome browser
AA seq
744 aa
AA seq
DB search
MNSALFLYTRDRDREREKRDRDDDRDRDRDRDRDRRDRDRDRSRWESSGVTSAPMSVPTP
TVVINPLNLTPYSQKYFTILAKRKTLPVWEYKDKFMKMLEEQKIIVLVGETGSGKTTQIP
QWCMEYVRRKFPVNNMKGVACTQPRRVAAMSVAQRVADEIDVVLGQEVGYSIRFEDCTSN
KTLVKYMTDGMLLREGMTDPLLEKYGVILLDEAHERTLATDILMGLLKEVERQRADLKLV
VMSATLDAGKFQHYFDDAPLMTVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVA
GDILLFLTGQEEIEEACKRIKREIDNLGPEVGDLKTIPLYSTLPPPMQQRIFESAPPNKA
NGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQR
AGRAGRTRPGKCFRLYTEKAYDTEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMD
PPAPETLMRALELLNYLGALDDSGDLTRLGSMMAEFPLDPQLAKMVIASTDYNCSNEILS
VTAMLSVPQCFLRPNEAKKLADEAKMRFAHIDGDHLTLLNVYHAFKQNHEDPQWCYDNFI
QFRSLKSADSVRQQLARIMDRFALRRTSTDFNSKDYYLNIRKALVNGFFMQVAHLERTGH
YLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYVRTVTDIKADWLMRLAPQYYDMA
NFPQCEAKRILERIAMKIQGWEKQ
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgcattgttcctttataccagggatagggatcgagagagggaaaagagggac
cgagatgatgacagagatcgagatcgtgatagagaccgtgatagaagagaccgtgacagg
gatagatcacgatgggaatcctcaggggttaccagtgcacccatgtccgtaccaactcct
acagtagttatcaatccattgaatctcactccttactcacaaaaatacttcacaatcctg
gccaagaggaaaacactgcctgtctgggaatacaaggataagttcatgaagatgctggag
gaacagaagattattgtgcttgtaggagagactggttctggtaaaactacacagatacct
caatggtgcatggagtatgtgaggaggaagttcccagttaataatatgaagggtgttgct
tgcacccaacccaggagagtagctgctatgagtgtagcccaacgtgttgctgatgaaatt
gatgttgttttgggtcaagaggtgggatacagcatcaggtttgaagactgcacttcaaac
aagacacttgtcaaatacatgacagatggtatgttgcttagggagggtatgaccgatcct
ttgctggagaaatatggtgtgatcttacttgatgaggctcatgaacgtacgttagctaca
gatatcctcatgggtttacttaaagaggtggagagacagagagcagatctcaagcttgtt
gtcatgagcgccacacttgatgccggaaaattccagcattattttgacgatgcgcctctg
atgactgtccctggacgtacccatcctgtagagatcttctatacccctgaacctgagaga
gattacctggaggctgctatacgtacagtggttcaaatacatatgtgtgaggaggtggca
ggagatatcttacttttcttgactggtcaggaggaaattgaagaggcctgtaaacgtatc
aaacgagagattgacaaccttggtcctgaggtaggtgacctgaagaccatcccgctgtac
tccaccctccctcctcctatgcagcagagaatctttgagagtgctccaccaaacaaggcc
aatggagctattgggcgcaaggtggtggtatctacaaacattgcagagacgtcattgact
atcgatggtgtggtgtttgtgattgatcctggatttgcaaagcaaaaggtgtacaaccct
cgtatcagggtggaatctctgctggtatcacctatcagtaaagccagtgcccaacagagg
gcaggtcgtgctggtcgtacccgtccagggaaatgtttccgtctctacactgagaaagca
tatgataccgagatgcaggataacacatatcctgagatcttgagatctaatcttggtact
gtggttctacagcttaaaaagcttggtatcgatgacttggttcattttgatttcatggat
ccaccagctcctgagactctgatgagagctctagagctgctgaactacctgggagctttg
gatgatagcggtgaccttacccgcctaggctcaatgatggctgagtttccccttgaccct
cagcttgctaagatggtcattgccagcacagattacaactgctccaatgagatcctttct
gtaacagccatgttatcagtcccacagtgcttcctacgacccaacgaggccaagaagctg
gctgatgaggctaagatgaggtttgctcacatcgacggtgatcacttgactctactcaat
gtctaccatgcattcaagcagaaccatgaggacccccaatggtgctatgataacttcata
cagttccgttccctgaagtctgcagacagtgtacggcagcagctggctaggatcatggac
cgcttcgctctacggaggaccagcacggacttcaacagcaaggactactacctgaacatc
cgcaaggctctggtcaatggattcttcatgcaggtcgctcacttagaaagaactggtcat
tacttgaccgtcaaagacaaccaagttgtccaacttcatccatccacctgtcttgaccac
aagcctgaatgggttctttacaatgaatttgtactgaccactaagaattatgtccgaacg
gtcactgacatcaaggcagactggttgatgcgactcgctccacagtattatgacatggcc
aacttcccacaatgtgaagccaagaggatactggagaggattgctatgaagatacaagga
tgggaaaaacagtaa
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