Lytechinus pictus (painted urchin): 129273384
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Entry
129273384 CDS
T09066
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129273384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lpic03041
]
129273384
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129273384
Spliceosome [BR:
lpic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129273384
Complex C
U5 SnRNP specific factors
129273384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
129273384
NCBI-ProteinID:
XP_054766386
LinkDB
All DBs
Position
12:4960992..5001742
Genome browser
AA seq
2147 aa
AA seq
DB search
MADATARSLQYEYKANSNLVLQVDRSLVERRNRDEATGEVMSLVGKLGHSKMGDRAQRTR
PPQQKEKEAKRKKRDEARYDMKKFKGQTLLSAGVEDIVGIYYRPKTQETRGTYEALLSFI
QAAIGDQPRDILCGAADEVLATLKNEHSKNKDKKRELEQLLGTLAEERFALLVNLGKKIT
DYGAEKEKKNIDDDIDETLGVNVQFEESDDEGGDDEDVGEIKEEESDEEEGMEDADVKST
LKTSLGGGDDVLMAAKKGLHPRDIDAFWLQRQLGKFYDDPNISQARSAEVLEILKNATDD
GQCENQLVMLLGTTQFEFIKLLRQNRMMILCCTLLAKSQTVAEKQQLEDQMKQDPELAAI
LQALTETDKEDIIKEERARKAAARQSRVDADLDAMEVDDDDNTMLPEKLIDLEDISFAQG
SHLMANKRCQLPDGSYRKQRKGYEEVHVPALKPKPYEDDESLVPIDRLPKYAQPAFEGFK
SLNRVQSRLYKAALETDENLLLCAPTGAGKTNVALLTILREIGKNINLDGTINTSAFKII
YIAPMRSLVQEMVGNFRKRLDSYGITVSELTGDHQLTKDQITATQIIVCTPEKWDIITRK
GGEKTYTQLVRLIIIDEIHLLHDDRGPVLEAVISRTIRNIETSQEDVRLVGLSATLPNYQ
DVAGFMRVKPDKGLFFFDNSFRPVPLEQQYIGITEKKALKRFQLMNEIVYEKVMDNAGKN
QVLVFVHSRKETGKTARAIRDLCLEQDTLGQFLREGSASTEILRSEAEHAENLELKDLLP
YGFAMHHAGMTRLDRTLVEDLFADRHIQVFVSTATLAWGVNLPAHTVIIKGTQIYNPEKG
RWVELGPLDVLQMLGRAGRPQYDTKGEGILITSHSELQYYLSLQNQQLPVESQFVSKLAD
NLNAEVVLGNIQTMKDAVTWLGYTYLYIRMMRNPTLYGIPGDSKDTDPDLDQFRIDLIHA
AAIALDKNNLLKYDRKSGNLQVTELGRIASHYYCTNDSMSTYNSLLKPTLSEIDLFRVFS
LSSEFRHMVVREEEKMELTKLLERVPIPIKESIEEPSAKVNVLLQAYISQLKLDGFALVA
DMVFITQSAGRLVRAIFEIVLHHGWAQLADKTLSLAKMIDKRMWQSMSPLRQFRKIPEEV
VRKIEKKNFPWERFFDLGPNELGEFIRMPKMGKTIHRYIHHFPRLELATHIQPITRSTLR
VELTITPDFQWDEKIHGNSEAFWILVEDVDSEIILHHEYFLLKSKFAQDEHIVKFSVPVF
EPLPPQYFIRVVSDRWIVSETQLPVSFRHLILPEKNLPPTELLDLQALPVSALRNPAFEN
LYSSKFSVFNPIQTQVFNAVYNGDDNIFVGAPTGSGKTIIAELAILRMLLQSSECRCVYV
TPLEALAEQMYNEWHLKFQMQLGKKVVLLTGETSTDLKLLAKGNVIISTPDRWDVLSRRW
KQRKNVQNVNLFIIDELHLIGGDNGPVLEVICSRMRYISSQIERNIRLVALSSSLANAKD
IAQWLGASPTNTFNFHPNVRPVPLELHIQGFNITHTGSRLIAMVKPTYNAIIKHSPTKPV
IVFVPSRKQTKLTAIDLLTYVTAEDGSESRFLHVDKDDLAAHLSKVSDETLREMLSNGIA
YLHEGLSEIEQKVVEQLYMSGAVQVVVASRMMCWGMTLNAHLVVVMDTQYYNGKIHAYVD
YPITDVLQMTGRANRPEIEHEVSKCVVLCQGSKKDFYKKFMYEPLPVESHLDHCLHDHFN
AEVVTKTIENKQDAVDYLTWTFIYRRMTQNPNYYNLQGMTHRHLSDHLSELVENTLQDLE
HSKCISIEDEMDISPLNLGMIAAYYYINYTTIELFSMSLNNKTKIKGLIEIISSAAEYEN
IPIRHHEDSMLKQLSSRTPNKVSNPRYNDPHLKTNLLIQAHLGRMQLSAELQSDTEDILN
KALRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWNKDSYLKQLPHFGVELVKKCTEK
SIESIFDIMEMEDEERHELLQMTDAQMADVARFCNRYPNIELMYDVQDTDSLESGSPVVI
MVTLEREDEITGPVVAPLFPQKREEGWWVVIGDTKTNSLISIKRLTLQHKAKVKLDFVAP
SPGSHHYTIYFMSDAYMGCDQEYQFDIDVKEPGSDASGESDESSDEE
NT seq
6444 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgctacggccaggtcactacaatatgagtacaaagcgaactccaatcttgta
cttcaagtcgatcgctcgctggttgagcgaagaaatcgtgatgaagccactggtgaagtg
atgagtttggttggcaagctgggccacagtaagatgggagacagagctcaaaggaccaga
ccacctcagcagaaagagaaggaggcaaagaggaagaaacgagacgaagctcgttacgac
atgaagaagttcaaaggtcaaaccctcctttctgctggtgttgaagacattgttggaatc
tactacagaccaaagacacaggaaaccagaggaacctatgaagcgttgctcagtttcatt
caagctgctattggagatcagcctcgtgatatcctctgtggagctgctgatgaagtcctt
gccaccttgaagaatgaacacagtaagaacaaagacaagaagagggagctggagcagtta
ttaggaactttggctgaagagaggtttgccctgcttgttaaccttggcaagaagatcaca
gattatggagcagagaaggagaagaaaaatattgatgatgacattgatgaaacccttggt
gtgaatgtccagtttgaggagtctgatgatgaaggaggtgatgatgaagatgttggtgag
atcaaggaagaagagtctgatgaagaggaaggaatggaagatgctgatgtcaaatcaacc
ctcaagacaagtcttggtggtggggatgatgtcctaatggctgcaaagaagggtctccac
cctcgtgacatagatgccttctggcttcagaggcagttgggtaaattctatgatgatcct
aacatctcacaggcaaggtctgcagaagtcttggagattctcaagaatgcaactgatgat
ggccaatgtgagaatcagcttgtcatgctccttggaaccactcagtttgaattcatcaag
ctcttgagacagaacagaatgatgatcctttgttgtacgctgttggcaaaatcccaaacg
gtggctgagaagcaacagctggaggatcagatgaagcaagacccagagctagcggcgatc
ctccaagccctcactgagaccgataaagaggatatcatcaaagaagaaagagctcggaag
gctgctgccagacagagcagggttgatgcagatcttgatgccatggaagttgatgatgat
gacaatacaatgcttccagagaagttgattgatctggaggatatatcctttgctcaaggg
agtcatctgatggcaaacaaacgatgtcagcttcctgatggttcctatcgtaaacagagg
aaaggatatgaggaagttcatgtaccagctctcaagccaaagccatatgaagatgatgag
tccctagtgccgatcgatcgcctacctaagtatgcccagccagcgtttgagggattcaaa
agtctgaatcgtgttcagagcagactgtataaagcggctttagagactgatgaaaacctg
ctgctctgtgccccaactggtgctggtaagaccaatgttgcattgctgaccatcttgagg
gagattggtaagaacatcaatcttgatggcaccatcaacacatcagcctttaagatcatc
tatatcgctcccatgaggtcacttgtacaggagatggttggaaactttagaaagaggctg
gattcatatgggatcacggtatctgaattgaccggtgaccatcagctgaccaaggatcag
atcacagccacacagatcattgtttgtaccccagagaaatgggatatcatcacaaggaaa
ggaggagaaaagacctacacacagctggtcagactcatcatcattgatgagattcatctc
cttcatgacgatcgaggtccagtcttggaagcagttatttcaaggacaatccgtaacatc
gagacctcccaggaagatgtccgtttggtcggtcttagtgcaacactaccaaactaccag
gatgtggctggattcatgagggtcaagccagacaagggactgtttttctttgataacagc
ttccgtcctgtcccgctggagcagcagtatattggtatcacagagaagaaggctctcaag
aggtttcagctcatgaatgagattgtctacgagaaggtcatggataatgctggcaaaaac
caggtgcttgtgtttgtgcattctcgtaaggagaccggtaagactgctagagcaatcaga
gatctttgtttggaacaggacacccttggtcagttcttgagggaaggttcagcctccact
gagatcttgaggtctgaagcagaacatgcagagaatctagaactgaaggacctacttccc
tatggctttgccatgcatcacgctggaatgaccagacttgacaggacactggtagaagat
ctgtttgctgatcgtcatatccaggtgtttgtatccactgcaacccttgcctggggtgtc
aacctccctgctcatactgtcatcatcaagggaactcagatctataatccagagaagggt
cgatgggtggaacttggacctcttgatgtacttcagatgttgggaagagcagggcgccct
cagtatgatacgaagggagagggtattcttatcaccagccacagtgagcttcagtattat
ctctcactgcagaatcagcagctaccagttgagagtcagtttgtgagtaagcttgccgat
aacctcaatgctgaagtggtccttggtaacatccaaacaatgaaagatgctgtaacctgg
ctgggatacacctatctctacatacgtatgatgcgtaatcccacactctacggaatccca
ggagactccaaggatacagatccagacctggatcaattcaggatagacctgatccatgct
gctgctatcgctctcgataagaacaacctgctcaagtatgatcgcaagtcaggcaactta
caagttactgaacttggacgcattgccagtcactactactgcaccaacgattctatgtca
acctacaacagtctcctaaaaccaaccttgagtgagattgatctcttccgtgtcttctct
ctatcatcagagttcaggcatatggtcgtcagagaggaagagaagatggagcttaccaag
ctcctggagagggttcctattcctatcaaggagagtatagaggaaccaagtgcaaaggtg
aatgtattgcttcaggcatacatctctcaactgaagctagacggctttgctttggtagct
gatatggtctttattacgcagtctgctggacgattggtaagggccatctttgagattgtt
cttcatcatggatgggctcagctggcagataagactctctcactggcaaagatgattgac
aagagaatgtggcagtcgatgagccccctccgtcagttccgcaagattcccgaggaggtt
gtgaggaagattgagaagaagaactttccttgggagaggttctttgatctaggacccaac
gaacttggagagttcatccgtatgccaaagatgggaaagactatccacagatacattcat
cactttccacggttggagctagctactcacatccaacccatcacaaggagtacattgaga
gtagagctaaccatcacacctgacttccaatgggatgaaaagatacatggaaactcagag
gccttctggattcttgttgaagatgtagacagtgagatcatccttcaccatgagtacttc
ctactcaagagcaagtttgcccaagatgagcacattgtcaaattctctgttccagtcttt
gagcctctccctcctcagtacttcatcagggtagtctccgacaggtggatcgtttccgag
acacagctaccagtgtccttccgtcatctgatccttccagagaagaatcttcctcctaca
gaactcctagatcttcaagccttgcctgtgtcagctcttaggaatcctgcctttgagaat
ctctacagcagcaagttctcagtcttcaatcccatccagacacaagtgttcaatgctgtg
tacaatggagatgacaatatctttgttggcgcccccactggcagtgggaagacaatcatt
gccgagttggccatcctacgtatgttgcttcaatcatcagaatgtaggtgtgtctatgtc
acacctctagaggctcttgctgaacagatgtacaatgaatggcatctcaagttccagatg
cagcttggtaagaaggtggtactcttgaccggtgagaccagtactgatctcaagctcctt
gccaagggtaatgtcatcatcagtacaccggatagatgggatgtgttgtcacgacgatgg
aaacaacgtaagaatgtacagaatgtcaacctcttcatcattgatgagctgcacttgatt
ggtggggacaacgggcctgttcttgaggtgatctgttccaggatgcggtacatctcatct
cagattgagcgtaacatccgtctcgtagccctcagttcatcactagccaatgctaaggat
attgctcagtggctaggagctagtcctactaacaccttcaacttccatcccaacgtgaga
ccggtccctcttgagctacatatccagggattcaacatcactcacaccggatcacgtctc
atcgccatggtgaagcccacgtacaatgctatcatcaagcattcccctaccaaacctgtc
atcgtcttcgtaccgtctcgtaagcagactaagctgactgccattgacctcttgacctat
gtgacggcggaggatggttctgagagtcggttcctccacgtcgataaggatgatctagca
gctcatctcagcaaagtgtctgatgagacactgcgagagatgctgagtaacggtatcgcc
tacctccatgaaggtctctctgagattgaacagaaggttgtagaacagctctatatgtct
ggagcagtgcaggttgtggtagcatctaggatgatgtgctggggaatgacactcaatgct
catctggtggttgtcatggatacgcagtactataatggcaagatacatgcgtatgttgac
tacccaatcactgatgtactccaaatgacaggaagggctaacagaccagagattgaacat
gaagtgagtaagtgtgtagtcctgtgccaaggctccaagaaggatttctacaagaagttc
atgtatgagcccctgccagttgagtctcatctggatcattgcctccatgatcacttcaat
gctgaggttgttaccaagacgatagagaacaaacaggatgcagttgattacctgacatgg
acattcatctacagacgaatgacacagaatcctaactactacaatctacaaggtatgacc
catcgtcatttatctgatcatctctctgagttggttgaaaacacactccaagaccttgaa
cattccaaatgcatcagcattgaggatgagatggacatcagtcctttgaaccttggtatg
attgctgcctactactacatcaactacacaaccatagaactcttcagcatgtcacttaac
aacaagactaagatcaagggtttgattgagatcatctcgtcggcagcagaatatgagaac
attcccatcaggcatcatgaggactccatgctcaaacagttgtcaagtcgtacaccaaac
aaagtgagcaacccacgttacaacgatcctcatctcaagacaaatcttctcatccaagct
catcttggcaggatgcaactatctgctgagttacagtcagatacagaagacattctcaat
aaggctctacgtttgatccaagcctgtgtggatgtgttgagtagtaatgggtggctatcc
cctgccttagcagccatggagctggctcagatggtcactcaagctatgtggaacaaggac
tcctatctcaaacaactccctcactttggggtagaactggtcaagaagtgcacagagaag
tcaatagagagtatctttgatatcatggagatggaggatgaagagagacatgagcttctt
cagatgaccgatgcccagatggctgatgtagctaggttctgtaacagatatccaaacatt
gaactcatgtatgatgtacaggatacggacagtctggagagtggttcacctgttgttatc
atggtaacattagagagagaagatgagatcactggacctgttgtagctcccctcttccct
cagaaacgagaagagggttggtgggttgtcattggtgataccaagaccaacagtctcatc
tccatcaagcgtttgacccttcaacacaaggccaaggtcaagctggacttcgtagctcca
tcccccggcagtcatcattacaccatctacttcatgagtgatgcctacatgggatgcgat
caggagtaccagtttgacatcgacgtcaaggagcctggtagcgatgcaagtggagagagc
gatgagagctcggatgaggagtag
DBGET
integrated database retrieval system
