Lytechinus pictus (painted urchin): 129277420
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Entry
129277420 CDS
T09066
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03022
Basal transcription factors
lpic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129277420
09124 Replication and repair
03420 Nucleotide excision repair
129277420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129277420
03400 DNA repair and recombination proteins [BR:
lpic03400
]
129277420
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129277420
DNA repair and recombination proteins [BR:
lpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129277420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
STN1_2
Motif
Other DBs
NCBI-GeneID:
129277420
NCBI-ProteinID:
XP_054769575
LinkDB
All DBs
Position
15:27126326..27136484
Genome browser
AA seq
370 aa
AA seq
DB search
FPYSELPVLGKHCIMRVLFIDTPIPQAAVTSWIQSNQQEQLHVALKTLTDLRLFKDQSLP
GGLPGWVLNVTFRTNLKTALIGGGKPWAISGRGGKDKKVKDTAALDKYASERWECVLHFL
VGSSKAVDTLSRDIATVLTHSGLMKMGESGGKPVITPSGFQFLLLDTPSQVWFFMLQYLE
TAQARGLDIVDALSFLFQLSFSTLGKDYSSEGMSEQQLHFLQHLRELGLVFQRKRKSMRY
YPTRLAINLASGVSSMVKDDHKDGFIVVETNYRVYAYTESDLQVEILGLFCSMLYRFPNL
SVAALTRESVQLAISNGITAEQILRFLRTHAHPNMRQKMPIIPPTISDQVRLWELERDRL
SFTQGKHMWD
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
tttccatacagtgagcttcctgtgctgggcaagcattgtatcatgagggttttgttcatt
gatactcctattccacaagcagcagttacatcatggatacaaagcaaccaacaggaacag
ctgcacgtagcattgaaaaccctgactgatcttcgtttgttcaaggatcagtcacttccg
ggtggtcttcctggatgggttctcaatgtcaccttcaggactaatctcaagactgctctt
attggaggaggaaagccttgggctatcagtggaagaggtggaaaggacaagaaggtcaaa
gacactgcggctcttgacaagtacgcttcagaaagatgggagtgtgtgcttcatttcttg
gtgggttcatctaaggctgttgatacattgagcagagatattgcaacagtgttgacacat
tctggtctcatgaagatgggtgagtccggaggaaagccagtgatcaccccctcgggattt
cagtttctgcttctggacaccccgtcgcaggtttggttcttcatgctacagtatctagag
accgctcaggctagaggtctagacattgttgacgctctctctttcctcttccagctcagc
ttctcaacattaggaaaggattattcatcagagggcatgtctgagcaacagcttcatttc
ttacagcatctcagagagctaggcttagtattccaaagaaagaggaagtcaatgcgctac
tacccaacaagacttgccatcaacttggcttcaggtgtatcaagtatggtcaaagatgat
cacaaggatggcttcatcgtcgtagaaacgaactaccgtgtttatgcctacacagaatca
gatctacaggttgaaatattaggactgttttgctctatgctatacaggtttccaaacctc
tctgtggctgctctgacaagggaaagcgtacagctggccatatccaatggaatcacagct
gaacagatactacgtttcttgaggacgcatgcacacccaaacatgcgacaaaagatgccc
attatacctcctactattagtgatcaggtcaggttatgggagctggagagagatagactc
agctttacacagggtaagcatatgtgggactaa
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