Lytechinus pictus (painted urchin): 129277741
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Entry
129277741 CDS
T09066
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129277741
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lpic00536
]
129277741
Glycosaminoglycan binding proteins [BR:
lpic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129277741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
129277741
NCBI-ProteinID:
XP_054769866
LinkDB
All DBs
Position
15:complement(13672890..13733443)
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AA seq
1635 aa
AA seq
DB search
MKLLGDGGWHRVAIRVSGNQVSLTINCGTAQKWQIERSIRPLSLDQGVIVFGSNINGGTY
FDGIIQQALIIPDPTAADEQCLKFDLDCGMPANVLSLGKAPEVTPGEQVNGQVEFYDGSG
ASQSSDHFSYHYDFSVVDPALKVVVAGEGAGPISASGDRGNKGQKGDKGESRVEYYAGPV
GPPGPRGYAGPPGPDGPRGTAGPKGDRGRPGRDGVDGVSGLRGPPGPSFIVPAAVMSAMS
DAASSSKGPGSQANLAAIRQVLEEQRIAMRGERGPPGSHGSNGPMGPPGPDGPKGDPGPL
GDFGPRGPAGTPGQPGRSGKRGRPGKDGGRGQAGLPGEKGDRGYDGLPGLPGVKGAFGRS
GDTGPQGDTGPKGRDGEEGPYGDPGPSGPPGIRGAPGMRGPSGPQGIAGLEGEPGGPGPK
GPVGLPGVPGGPGPMGKPGSVGAMGPQGQSGPPGVQGPIGKPGIPGVPGTDGPAGHPGQD
GQSGPKGSMGAPGPIGVPGYTGPMGVKGARGISGSTGQKGVPGGDGLPGFKGELGLKGER
GQQGVPGPRGSEGIAGPKGEQGMPGEAGPIGTHGDQGPPGPPGIPGYPGNVGDKGELGHS
GKRGRTGRKGSRGPSGMRGPIGPSGPMGGPGTRGPQGIQGVAGEYGEQGERGPPGPVGDQ
GPPGAQGPRGFAGGKGPPGPPGQDGMPGFPGSRGESGLDGEAGTPGPGGVIGPQGPPGEP
GSTGPTGFPGPPGSPGEAGLPGNDGLTGPQGPPGPVGPPGLQGPEGTRGFSGERGMRGEQ
GIEGMKGEEGPPGPSGPPGVQGQLGPPGPPGGVGLPGRPGDQGSIGPSGERGDAGEEGPM
GPAGRDGLPGPRGPPGPIGQPGPQGPEGERGDSGPIGIKGTKGERGEGGPPGPPGERGPL
GESGPPGDDGEQGIPGQSGPRGPKGEEGSAGNPGAPGPIGLQGMPGPSGNKGETGDSGLT
GAPGPQGVPGKRGSPGSQGVGGAPGPRGDNGSPGLKGDKGDPGPPGRTGRDGPRGFKGDP
GPKGEPGSTGVPGNPGPRGIEGPMGPKGNQGPLGFPGELGLPGPEGIPGGIGEPGASGSD
GDPGPIGLQGLPGDAGRPGPRGRPGTPGSQGPPGREGPKGDPGEDGPPGLRGDPGPAGEN
GPQGPQGPPGLRGLPGPEGNPGEPGPPGAPGAQGQVGIQGPSGPQGDPGPVGPKGDRGFL
GRTGEVGIMGEKGDKGSQGESGPVGPKGDPGSEGPRGVMGPEGPPGLPGRDGLPGPKGEQ
GDFGIKGDRGVPGSPGQPGPPATAEYLQAMLDRGMLTLRPDMYPDFGAGFGGAGAGASTD
GEQTFEAGSSNVPLSASSSNPFGGTKRRKRQVDPNDLPSDNDFLPIDELLGNGMQGIDDL
PDMPFRYVPGFDELPLPYVKAMEVLFSSLDQLQTDVEGIKKPNGTKDNPARTCKDLLMCH
PKTQDGYYWIDPNEGCPDDAFYAFCNMTAGGDTCLAPDNTTSHLFYNFTEENSTDTKGFR
KAVPGEWFLENLRGKEFAYQGGIVQLTFLRLLSSKATQQFTYECVNSVAWYDEAEDSFDQ
ALRLLAANDEEFTFDGLNQPKVIKDECQSKPSRGETVLEVNTSKLHQLPIADFAPLDFGR
RNQKFGYTVGSACFN
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttttaggcgatggaggatggcatcgagtagcgatcagggttagcggaaaccag
gtttcattgaccatcaactgtggtaccgcacaaaaatggcagattgagagaagtatcaga
cctctttcactggatcagggcgtcattgtcttcggttcaaatatcaatggaggaacatat
tttgatggtatcattcaacaagctctcatcattcctgaccccacagctgcagacgagcaa
tgcttaaaatttgatcttgattgtggcatgcctgccaatgtcttatcgctgggaaaggct
cctgaggtcactcctggtgagcaggtcaacggtcaagtggaattttatgatggatcagga
gcctctcagtccagtgaccactttagctatcactatgatttttcagtcgttgacccagcg
ctgaaggtcgtcgttgctggtgagggtgctggccccatcagtgccagtggtgatagggga
aacaaaggacagaaaggggataaaggagaaagtcgagttgagtactacgcaggaccagtt
ggaccaccagggccaaggggatatgctggaccaccaggacctgatggacctagaggcacg
gcaggccctaaaggagaccggggcaggccggggcgagacggagttgacggtgtgtctggt
ttaagaggaccccctgggccaagcttcattgttccggcagcagtaatgtcagccatgtct
gatgcagcatcaagcagtaaaggtccaggaagtcaggccaacctagcagccatcaggcag
gtcttggaggaacagaggatagcaatgagaggagagaggggtcctccgggatcacatggt
tcgaatggtccaatgggacctcctggtccagatgggcctaaaggagacccaggtccatta
ggagactttggtccacgtggtcccgcaggaacaccaggtcagccaggacgttcaggcaaa
aggggtcgtcctggtaaagatggaggacgaggccaagctggtcttccgggtgagaaagga
gatcgtggctatgatggtttgccagggctacccggtgtgaaaggagcctttgggcgatcc
ggagacacaggacctcagggagatacaggaccaaaaggaagagacggagaggaaggtcct
tatggagacccaggaccatctggtcctcctggaatccgaggggcacctggtatgaggggg
ccgtctggaccccagggtatagctggacttgaaggagaaccaggcggacctggacccaaa
ggccctgttggtcttccaggtgtccctggaggtcctggaccaatgggcaaacctggatct
gtgggtgcaatgggccctcagggacagagtgggccacctggtgtccagggtcctattgga
aagcctggtatccctggtgttcctggaactgacggacctgctggacacccgggacaagat
ggacagtctggaccaaagggatccatgggtgcacctggtcctattggtgttccaggctac
accggtccaatgggagtgaagggagctcgaggaatctctggaagtactggtcagaaaggt
gtccctggtggtgatggtctgccaggattcaagggagaacttggattgaaaggagaaagg
ggacaacaaggagttcctggacctcgaggatctgagggaatcgctggaccaaagggtgaa
caaggtatgcctggtgaagctggacctatcggcacacatggagatcagggaccaccaggc
ccaccaggcattccaggttacccaggaaacgtcggtgataagggagagttgggtcacagt
ggaaagcgtggaaggacaggaaggaaaggatcaaggggtccatctggaatgaggggtcca
attggaccatctggtccaatgggtggacctggaactcgaggtcctcagggtattcaggga
gttgctggtgaatatggagagcaaggagaacgtggacccccaggaccagttggagaccag
gggccaccaggagcacagggacctcgtggattcgctggaggaaaaggaccacctggacca
cctggtcaagatggtatgcctggattcccaggatctcgtggagagtctggtcttgatgga
gaggctggaacgccaggaccaggtggtgtaattggacctcagggtccaccaggagagcca
ggatcaacaggacccacaggattccctggccctccaggtagccctggtgaggctggtctt
cctggaaacgatggacttacaggtccacagggtccgcctggtcccgttggtccacctggt
cttcaagggcctgaaggaacacgaggtttctcaggagaacgtggaatgagaggagaacag
ggtattgaaggaatgaagggagaggagggacctcctggaccatcgggaccaccgggtgtt
caaggtcaacttggacccccaggaccaccaggaggtgttggtctaccgggtcgaccagga
gatcaaggatcgattggaccttcaggagaaaggggtgatgctggagaggagggtcctatg
ggacctgctggtcgagatggtctgccaggtccaagaggacccccaggacccattggtcag
ccgggcccacagggtcctgaaggagagaggggagacagtggacccatcggaatcaaggga
acaaagggagagcgaggcgaaggaggtccacctggtcctccaggcgaaagaggacccctc
ggagagtcaggaccaccgggagatgatggagaacaaggaatcccaggacagtcaggaccc
cgtggaccgaagggagaggaagggtcagcaggaaacccaggtgctccaggacctatcggt
ctacagggtatgcctggtccttcaggtaacaagggagaaacaggggattccggtttaacc
ggagctccaggtccacagggtgtcccaggtaaacgtggatctccaggaagtcagggtgtc
ggaggtgcaccaggtcctcgtggagacaacggatcacctggattgaagggagacaaagga
gacccaggtccaccaggaagaacaggcagagatggaccaaggggcttcaaaggtgatcca
ggaccaaagggcgaacctggttctactggtgtccccggtaacccaggaccacgtggtatt
gaaggaccaatgggacccaaaggaaaccagggtccacttggattcccaggagaacttggt
ctgccaggaccagaaggaatacccggaggtattggagaaccaggagcatcaggatcagat
ggagacccaggaccaattggtctacaaggattgccaggagatgcaggcagaccaggacca
cgtggaagacccggtacccctggttcacaaggtccacctggaagggagggtccaaaggga
gatcccggtgaagatggtccacctggtctacgtggagatcctggtccagctggtgaaaat
ggtccacaaggtcctcaaggcccaccaggattgagaggtctccctggaccagagggcaac
ccaggagaaccaggacccccaggagcacccggagcacaaggtcaagttggaatccaagga
ccttcaggaccccaaggtgacccaggtccagttggacctaagggagatcgcggattcctt
ggaagaacaggagaggttggaattatgggagagaagggagacaagggaagtcaaggagaa
tcaggtccagtaggacctaaaggagaccctggttctgaaggtcctcgtggtgtcatggga
ccagaaggtccacctggtcttccaggtagagatggattgcccggtcccaagggagagcaa
ggagactttggtatcaagggagataggggagtaccgggttctcctggacaacctggacca
ccagcaacagcagagtatctccaagccatgttggaccgtggcatgctcacactccgtcca
gatatgtatccagactttggcgctggatttggaggtgctggagccggcgcctcgacagac
ggtgaacaaacctttgaagctggcagcagcaacgttcccttgtccgcctccagttccaat
cccttcgggggcaccaagaggagaaagcgacaagtggatcccaatgatctaccatcagat
aatgacttcctgcccatcgacgagcttctgggtaacggtatgcagggtatcgatgatcta
cccgatatgcctttcagatatgtgcctggctttgatgaactccctctcccctacgtcaaa
gccatggaggtcctcttttcatcactcgatcagctgcagacggatgttgagggcatcaag
aaaccaaatggaaccaaggataaccctgctcgtacctgcaaggatcttcttatgtgccat
ccgaagactcaagatggttattactggattgatcctaatgaaggttgtcctgatgacgca
ttctatgctttctgtaatatgacggctggcggggacacctgcctagcccccgacaacact
accagtcatctgttctacaatttcacggaagaaaattcgacggatactaaaggattccga
aaagcagttccaggagagtggttcctggagaatttaagaggaaaagagtttgcctatcaa
ggaggtattgtccagctgacattcctacgtctgctcagctccaaggcaacgcagcagttc
acatacgagtgcgtgaatagtgtagcgtggtacgatgaggcagaagacagcttcgatcaa
gccctcaggcttcttgcggccaacgacgaggagttcacattcgatggcctcaaccaacca
aaggtcatcaaagacgagtgtcagagcaagccctcgcgcggtgaaaccgtcttagaagta
aatacatcaaagcttcaccagctgccaatagctgacttcgctcctcttgatttcgggaga
cgcaaccagaagttcggctacaccgttggatccgcgtgtttcaactag
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integrated database retrieval system
