Lytechinus pictus (painted urchin): 129278005
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Entry
129278005 CDS
T09066
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129278005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129278005
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129278005
mRNA cycle factors
Common to processing body (P body) and stress granule
129278005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
129278005
NCBI-ProteinID:
XP_054770173
LinkDB
All DBs
Position
15:complement(35045023..35076746)
Genome browser
AA seq
1465 aa
AA seq
DB search
MNFVQLLRKANDLKAQLTAEGGSDAWVSRQALQDAFHQLLLLDLETALDKKLEQELWNHV
FKNHISSLQHKARDRMNPKRSEVQAMLSLLLDNASGFYIQLLQEICSAFNVQLVCRIKAQ
RLGLFQDTLPSSQKPVQPKAVSCHYICQHCLVHLGDIARYRNDTQQAESFYCHAASLVPS
NGQPYNQLAIVSATKGDQLSMAFYYIRSIAVKHPFPAAATNLQTTYAKLVDRDEVKIFKM
REVELIHYFIKFHAIMYLATCEQDLQVASSIKDKLEENFRSHLSQEILTSRQLTQMAAIN
LFALHSIRQHVNNGERGTKSVTTDLVGLVGAQDLGPYAANNLQCWTLVMGFTFNLLQMML
HYAPQKGGESPVDGWPGLPAVRLLLGWIYLQPAIFDDPVLSNKTGVWSKLGRVLTSLQVD
ASPQGDDSTSSLPLPEDNLLDGFTPLQEFQRDLDFGQNKRQGWNRNAINQERSQRLSSQG
KWLAHHQPSLLKVETNSSNKLVFTSPLGDDVTSRRSSHHQQRQQRAAKAAASNAKGSESS
SRSASVEKETPKKIVGMQRKDGSRERGSEENQSKTIAVQAIMSRPNSDVNKPTVTYKGQE
RSNQGSNSKSSKSPSSSTTKDQEATKRHVQWQNPPHAFAQEPSSYYPKKPHPTSQPHPMP
QSNPTAHPLPNAQPHLGPGSVQPGQQPQGTGPASAPRHPPPSGPYPQQVGQQRLPHPYGH
PPPPPGPPPPGVPPPSMGMPPPPPDQMYPPPPLGPPPSFNPSSQNAPHRAMHPPPPRQMG
PPPMPHVAPPGWQQPHRDVSRDGQPPHLPRDGPPSPRGVPPHMQPPKVQIPPPMPQGTQM
SPNSNMPQSQGHHHHQGGWPARPGPMPTVGERQEDHPPGDTMSNISMWNAAMQDKLGHTH
MQRNRPDMQQYQQQGQQGMGRDTSPIRSPIGNSPQFRLSPSVEDFGQGLVQAGQPPRRMS
NPTEMQMQGYGPNQNFDQGRMNYMPSMANSNEHPGRMQSQQKQPSVGPPPQILDSQGANL
LELLAKMQQQIVPENPIGSSNSGTKMRYSPEEHSVEAFRANLDNSQQKNVRDPPGFRTAP
ERFYDDQLAKNNGRPGGSEFYGMQQGEQRGTIGYNQLGNRSQGGSAFRKVQPQQPDQKDS
LFPQSDLEAKVSRSYEPGDAFSFFTPSSNQQEKQHPQQQQQQMLGGENLKFGRDIFGQDS
GLQEPQSFPYRRSSGGLYEKSASGFTSSQPPTSSSDTAWRMENREESNQHLRGIFPGPQA
GGGSSGGGKAGSNAVRRGSEETTSTGYNARWTGDSREQMVTEGTRRPSQDALFNQMNSGG
SGQSLFQQEPFIERESSSSSYSTPQHHQSAASKNSYFSGSALKGKQPDEENVFSSSGNSY
SLFSSPSPWSSRQEEGDGGLSKSGEGLGSTLGLKWREPQLSSSPTSSLLPERIQSIWSSP
LRSEQSPLEKILGHTVSLEQQKPDT
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgttcagctattaaggaaggcaaatgacctcaaggcacaattgacagctgaa
ggtggtagcgatgcttgggtgtccagacaggcattgcaagatgcctttcatcagttgctc
ctgcttgacctggagacagcgctggataagaagctggagcaagagctctggaatcatgtt
ttcaagaatcacatttcctcactgcagcacaaggccagggatcgcatgaatccaaagaga
tctgaagttcaagccatgctttctcttctacttgacaatgctagtggtttctacatccag
ctccttcaagagatctgcagtgcattcaacgtacagctcgtctgtcgcatcaaagcacaa
cgcttgggacttttccaagatacactgccatcatctcagaaacctgttcaacccaaagct
gtgtcatgccactatatctgtcaacattgtcttgtccatctaggtgatattgctcgttac
cgtaatgacacacaacaagcagaaagcttctattgccatgcagccagtcttgtgccatct
aacggtcagccatacaatcagctggccattgtctcggcaaccaaaggtgaccaactatca
atggccttttactacatccggagcatagcggtcaagcatcccttcccagcagctgccacc
aatcttcagaccacctatgcaaagctggttgaccgggatgaggtgaagatcttcaagatg
cgtgaggtggaactcattcattatttcatcaagtttcatgccatcatgtatttggctaca
tgtgaacaagatctccaagtagctagctccatcaaggacaagctagaggagaacttccga
agccacttgtcacaggagatcctgaccagtcgccagctgacacagatggcagccatcaat
ctgtttgccctgcatagcattcgccagcacgttaacaacggagagcgaggaaccaaatcg
gttactacagatcttgtaggattggtcggagctcaggacctaggaccttatgcagcgaac
aacctccagtgttggactttggtgatgggattcacattcaatttgcttcagatgatgctt
cattatgcccctcagaaaggaggggaatccccggtagatggttggccaggtctacccgct
gtgcgacttctcctgggatggatttacttgcagccagcaatctttgatgatccagtcctc
tcaaacaagactggggtatggagtaagcttggtcgtgtgctgacgtcccttcaagtagat
gcttcacctcagggcgatgactccaccagctccctcccgcttcctgaggataaccttctt
gatggcttcacacctctccaagagtttcaaagggatctagactttggtcagaacaagagg
caaggttggaataggaatgcaatcaaccaagagagaagtcagagattaagcagtcaggga
aaatggcttgctcatcatcaaccaagtcttctgaaagtagaaacaaactcttctaacaag
cttgtctttactagtcctcttggagatgatgtgacatcacggagatcctcccatcatcaa
caaagacagcagagggcagcaaaggcagcagcatctaatgccaaaggctccgagtcgtca
tccagatcagcatcagttgagaaagagacccccaagaagattgtcggaatgcagaggaaa
gatggcagcagagagagaggaagcgaagaaaaccagagcaaaacaatagctgtacaggca
ataatgtccaggccaaatagtgatgtgaataagccaacagtgacctacaaaggtcaagaa
agatctaatcaaggtagcaattccaagtcctcgaaatcaccaagtagtagcaccaccaaa
gaccaggaagcaaccaagcgtcatgtccagtggcagaaccctccccatgcgtttgcccaa
gagccttcatcctattaccctaagaaaccacaccctacctcgcagccccaccctatgcct
cagtccaaccctaccgctcacccgctcccaaatgctcaaccacatcttggacctggatct
gtacagccaggacagcagccccagggcacaggccctgcctctgctccaagacatcctcct
ccatctggcccatatccccaacaggtgggtcagcagcgcctgccacacccctatggacac
ccaccaccaccaccaggtccaccaccgcctggagttcccccaccttcgatggggatgccg
cctcctcctcctgatcagatgtatccacctccacccttgggccctccaccgtcattcaac
ccgagctcccagaatgccccacacagggcaatgcaccctcccccacccagacaaatgggc
ccccctcccatgccccatgtagctcctccaggatggcaacagcctcacagggatgtcagt
agagatggacaaccaccgcatcttccaagagacggtccaccatcacctcgtggagtacct
cctcacatgcagccccctaaggtccagattccaccaccgatgccccaaggaactcagatg
tctcccaactctaacatgccccagtctcagggtcatcaccatcaccaaggtggttggcca
gccagacctggtccgatgcccactgtgggagagagacaagaagatcatcctcctggagac
actatgtccaacatcagcatgtggaatgcagctatgcaggacaaactcggccacactcac
atgcagaggaatagacctgacatgcagcagtatcagcagcaaggacagcagggcatgggc
agggataccagtcctatccggagcccaatcggcaactccccacaatttcggctgtctccg
tcagttgaggactttggccaagggctagtgcaggctggccaacctccaagaaggatgtcc
aaccctacagaaatgcagatgcagggatatggccctaaccaaaacttcgatcaaggtcgg
atgaactacatgccatccatggccaactcaaatgaacatccaggtcgcatgcagtcacag
cagaaacagccaagtgtaggacctcctcctcagatcctagacagccaaggtgcaaacctc
ctggaactgcttgcaaagatgcaacagcagattgtcccagagaatcccatcggcagcagt
aacagcggaaccaagatgcgctattctcccgaagagcactctgttgaagccttccgtgcc
aacttggacaacagtcagcagaagaatgtaagggatccccctgggttccgcactgctcca
gaaaggttctatgatgatcagctggccaagaacaacggcagacctggtgggtcagaattc
tatggcatgcagcaaggagagcagagaggcacgataggatacaaccaacttggcaacaga
tcccaaggagggtcagcttttaggaaggttcaaccacagcagcctgatcagaaagattct
ctgtttcctcagtctgacctggaagctaaggtttccaggtcttacgagccaggagatgct
ttttcattcttcacaccgtcatctaatcagcaagaaaaacagcacccccagcagcagcag
cagcagatgttgggtggggaaaacctcaaatttggacgggatatatttgggcaagattcg
ggtcttcaagaaccacaatctttcccatacaggagatcgtctgggggactgtatgagaaa
tctgcctctggctttacatcctcccagccccctacctccagctctgataccgcctggaga
atggagaacagagaagaaagcaaccagcatctccggggaatcttccctggacctcaggca
ggaggaggaagctctgggggtggtaaagccgggagcaatgctgtaaggagggggtcggag
gagacgacatctactggttataacgctcggtggactggagacagcagggaacagatggtg
actgagggaactagacgaccttcccaggatgcattgtttaatcagatgaattcaggtggg
agtggacagagtttattccaacaagaaccatttattgaacgagaatcctcatcctcgtcc
tattccactccacaacatcaccagtcagctgcatccaagaacagctacttctctgggagt
gcgttgaaagggaagcagcccgatgaagagaatgtcttctctagcagtggtaatagctat
tctctcttcagctcaccctccccctggtcatctaggcaggaagaaggtgatggaggattg
agtaagtcaggggagggtttaggaagtaccctgggcctaaagtggagggaacctcagctc
tccagctcaccaaccagcagcctcttaccagagagaatacagagtatctggtccagccct
ttgcgatcagagcaatcacccctggagaagatccttggccacactgtgagccttgaacaa
cagaaacccgatacgtga
DBGET
integrated database retrieval system
