Lytechinus pictus (painted urchin): 129278021
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Entry
129278021 CDS
T09066
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin NUP188-like
KO
K14311
nuclear pore complex protein Nup188
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129278021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129278021
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129278021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Motif
Other DBs
NCBI-GeneID:
129278021
NCBI-ProteinID:
XP_054770195
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All DBs
Position
15:complement(35849888..35907219)
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AA seq
1824 aa
AA seq
DB search
MAVFTTSCQELLLIISGHSAIRAEELIKEELVNHKKKFIEGVLFYKKHNEQSEKKLKDEK
AISELERKFLLQACKFLDLDALQCRELFDMYLLCAFRGTGKQLQAILKNERSVQALLLKL
WEFYHEDRLHLLQCIKHLANFWQDTDHPYQAQYSEFVEDLLKSDLIEKLLAQYEDRFGSL
APTKDKAGPLMTDRHRVRWCIQSLHEQSELLGIILLFLHASLTPTENLSRVINLFQQQGF
GTRQPYRHLLDAEEMAQKLSNKMEFLCCVIVLECMDLFPLMALADKSSLENHPLIANQKL
TKEFSSAVQSLGQASSHTPIQLAWMVIHTAAWPGKDTALVRRLGNQALRLHVFKYLTFGL
SKALSDENSVESMACHSVIYSLMSVVLNVFQEDSLGGVQDLVHLSSEFLSQPHLCREFWN
ADLEGGFAALLQSSMASFPLEFSLPMKFLKALSTEGSKQIYQLIAHLPAFTEPLDNNRSS
DIETSKGDNVWKLVNDKVVCKAGKHSPGFVIPAGTLGQLEQRPDGPPLITWDVDYSGFQL
FQCVLDWLISAAPTTSPSDTLVEQAKDVIELIEQMLQSDWSVSEFLQPITDCILPLVSSL
VQIQRPPLHLLGSCVKCLNTMAKYDPDQIWQSLQNTGFLPHTGTLYTQVGQAASGEGVFP
GTYGKVALEWEKQYGIYPVTLEFIKLVNTLIGGLASRSIGVATSQDLLACVIFLQRDVFT
TFQRWRYTDFKDKEKIGLSVMEVFHVVLHVVPTSPSSKKPHIHDEKQDGVCVRDASIYGL
LHTAAGQSLLTIAATGVDTIEQKQLESGSLLASTPDSQLVKLSLSILNRLLLLKPQQDPS
SSRSSPTNPSPEQCPLEIALTSHSTGLPHQPHLIAVIAGYIYHRQDPRLPTLAALLLRRL
AQVAPMSLFGCLGNQAPAFRDAFLFRLQTHSEDIRLRVGILELLAVSAETQPGFSELFLN
LQPKKDDPKGKKKKEKGDEKQSPKKEQELEIGKISCLHAVLDILEEDKQGTTHSPPDLHC
AALGFLQALWQDRRETALTILRKRPKFWNDVTAPLFKDPPAPKPDSQATSSLIKIRAHAL
RILSLECFHAGNSGIPKELEAVLKKLDEKNRFQFWSKYIGEVLQAYAPTNVDVEEYTLRE
HEGLVLLQAWRTVLVVAASSNYPALSINEPATRSTILNDLVAAIHKQAQNLDSIFNAKAL
ALLSSVYLTLVTKWTSNLSGQWSKVKLLVDTLEAILDAEDTPLLRRCQAAMMGALTNVLR
HRRLGQTKDKQGLEMSLMERLLPPICVALQHSKSYHHPAKATTQPPTQEVAIDITMEDLD
RTGGAEELRIHGDKVAKTTSTPPIQLPVIGAYLLDEVLLNQADQXPLVREHSVVSLLLST
LQACLQARKGLRYVEAVMVLLRDLAAIPLVAEAVRMTGYIQHTCLSLVWLHENINEQDYT
WTKKKKGEKADGTSWLTVYVESITVTATLLSTLNHAFLTDALDFFGVHRERMMKCLESVY
LLQSPLQLEEAQATTSLVYQLAHHTHQWRFHMPAELAILQETLARLTQSCVALLIRPRLL
QHMLEKKTNAKDSSHSHAVSEIMHTIPRRLLQHQVSTDQSDASISDDAQDVQSRLLLIMG
RILASFRLFSPDLLESLLNQSLEVSEYPMLYCLGFSTPSLDQKTPASFGTLISCINWCLQ
MLPKLDVNKSPMKVIDQKNVPSSSDSKALQRPALLFVLENAVHLIMAQGMRTLRDPTVPT
RDRQLLRRELGSELNTFLISLQRYFRRGKPGSPSDASPGTSSARLGTSSATSVMSKASLN
AAFTEAKEQLFFKVVQTFVQQLSK
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgttcacgacttcttgtcaggaattgcttctgataataagtggacattcagct
atccgagcagaggaattaataaaagaggagcttgttaatcacaagaagaagttcattgaa
ggagtgctattttacaagaaacacaatgagcaatcagagaaaaagctcaaggatgagaag
gcaatcagtgaacttgaaagaaaatttcttctccaggcgtgtaaattcttggatttggat
gctttgcagtgcagagaattgtttgatatgtacctcctctgtgcatttcgtgggactgga
aaacaacttcaggccatactgaaaaatgaaagaagtgttcaagccttgctgctcaaactt
tgggagttctaccatgaagacagacttcatctccttcagtgcatcaagcaccttgctaat
ttctggcaggatacggatcatccttatcaggcccagtattcagagtttgtggaggatctg
cttaaaagtgatctgattgaaaagcttctagcccagtatgaagacagattcggctccctt
gccccaaccaaggacaaggccggcccacttatgacggacagacatcgcgtacgatggtgt
atacagagtctccatgaacagagtgagcttctgggaatcatcttgctcttcttacacgcc
tcgttgactccgacggaaaacctctcaagagtcatcaacctctttcagcaacaaggtttt
ggtactagacaaccttacaggcatctattggatgctgaagaaatggcacagaaactctca
aacaagatggaattcttatgctgtgttatagtactagaatgcatggacctgtttccactg
atggctttagctgataagagcagtttagagaatcatcctcttattgccaaccaaaaatta
acaaaggagttttccagcgctgtccagtcccttggtcaagcatccagtcacacccccatc
cagctagcttggatggtcatccacaccgccgcctggccaggcaaggacactgctctcgtg
agacggttaggaaaccaggctctccggctccatgtcttcaaatacctaacctttggtcta
tcaaaggctctgtctgatgaaaactcagttgagtcaatggcatgtcattctgttatctat
tccctgatgtctgttgtacttaatgtgtttcaagaagattcgcttggaggagtacaggat
ctggtccacctgtcctctgagtttctatctcagcctcatctttgtagagagttttggaac
gcggaccttgagggtggatttgcagctctactccagtcttcaatggcatcctttccactg
gaattctcactacctatgaaattcctcaaggcattgtcaacagagggcagcaaacagatc
taccagttgatagcccacctgccagctttcaccgaacccctggacaataaccgtagctct
gatatagagacttctaaaggagacaacgtgtggaaactggtcaatgataaggtcgtttgc
aaagcaggaaagcattctccaggatttgtgattccagcaggaactcttggccagctggag
cagagaccagatggtcctccactaataacatgggatgttgattacagtggttttcagctg
tttcagtgtgtcttagactggttgatcagcgctgcacccacaacatcgccatcagatacg
ctggtagagcaggctaaggatgtcattgagctgatagaacagatgctgcaatctgattgg
tcggtgtcagagttccttcagccaatcacagactgtatactccccctcgtatcaagcttg
gttcaaatccagcggccacctctacatctactaggatcctgtgtaaagtgtctcaatacc
atggccaaatatgacccagatcagatatggcaatctcttcagaatactgggtttctaccc
cacacaggcactttgtacacacaagtgggacaagcggcaagtggtgagggggtgtttcct
ggtacctatgggaaggttgctctggaatgggagaaacaatatggtatctatcctgtcaca
ctagagttcatcaagctagtcaatacactcatagggggacttgcatccaggagtatagga
gtagccacttcccaggacctccttgcctgtgttatcttcttacaacgtgatgtcttcaca
accttccagagatggcgctacacagacttcaaggacaaagagaaaataggtttgagtgta
atggaagtatttcatgttgttcttcatgtcgttcccacatcaccatcatccaagaaacct
cacattcatgatgagaagcaagatggagtgtgtgttcgagacgcaagcatctatggtctg
ttacacacagcagcaggtcaatctttactcaccatcgctgctactggagtggatactatt
gaacagaaacaactggaaagtggaagtctcttagccagtaccccagacagccagctagtg
aagctctccctctctatcctcaaccgtctcctcctcctgaaaccccagcaggatccttcg
agctccaggtcctctccgaccaacccctcacccgaacagtgccctctagagatagccctg
acctcccattctaccggcctgccccaccagccccacctgattgctgtgattgcagggtat
atctaccatcggcaggacccacgcctcccgacgcttgctgcactgcttctcaggagattg
gcacaggttgcacccatgtcattgtttggttgccttggtaaccaagctccagctttccga
gatgcttttctgttcaggcttcagactcattcagaggatattcgactgagagttggtatt
ctagagcttctagcagtatctgcagagacgcagccagggttcagtgaactcttcctcaac
cttcaacccaagaaagatgaccctaaaggaaagaagaagaaagagaaaggagacgagaaa
caaagcccaaagaaagaacaggaacttgaaatcgggaagatcagttgtctacatgctgtg
cttgacatcttagaagaagacaaacagggcaccacccattcccctcctgatcttcactgt
gctgctctaggattccttcaagctctttggcaagatagaagagagacagctcttaccatc
ctaaggaaaaggcctaagttttggaatgatgtgacagcacccctatttaaggatccacct
gctcctaagccagactcacaggcaaccagttctctgatcaagattcgggctcatgcattg
aggatactgtctttagagtgtttccatgctggaaactctggtatacctaaagagttggaa
gctgttctgaagaagctggatgaaaagaacagattccagttctggtcaaagtacattggt
gaggtattacaagcctatgctcctacaaacgtggatgttgaagagtacacattgagagaa
cacgaaggacttgtcctgctacaagcctggaggacagttcttgtagtagctgcttcttct
aactatccagctttatctatcaatgaacctgccacaaggtctactatcctgaatgacttg
gtcgctgccatccataaacaagctcaaaatctagactccatcttcaacgccaaggctctt
gctctactctcatcagtctaccttaccctggttacaaaatggacaagcaaccttagtggc
caatggtccaaggtgaaactactggtagatactctggaggctattctagatgcggaagac
acgcccctcttgcgtcgttgtcaagcagccatgatgggtgccctaaccaatgtcttgagg
cacagacgcttgggacaaaccaaggataaacagggtcttgagatgtcactgatggagaga
ctccttcctccaatatgtgtggccttacaacacagcaagtcctatcaccatcctgccaaa
gctaccacccaacctcccacccaggaggttgctattgacatcaccatggaagaccttgat
aggaccgggggagcagaggaactccgaattcatggggacaaggttgccaagactaccagt
actcctccgatacaacttccggtcattggtgcgtatctcttagatgaggttctcttgaat
caggccgatcaangccctttagtaagggaacatagcgtggtttcattacttcttagtacc
cttcaagcatgcttacaggcaagaaagggcttacgttatgttgaggctgttatggtcctt
ctgagagatctagctgccattccacttgttgccgaagcagtacgtatgacaggttacatc
caacacacctgcctctctttagtctggctccatgaaaacatcaatgaacaagactataca
tggaccaagaagaaaaagggtgagaaagcggatggcacatcatggctgaccgtttatgta
gagtcaatcacagtgaccgctaccctgctgtccactctcaatcacgccttcttgaccgat
gcactggacttctttggggtacatcgtgaaagaatgatgaagtgtctggagtcagtatac
ctcttgcaaagcccccttcagctggaggaggcacaagctaccacctcccttgtatatcag
ctcgcccaccacacccatcagtggaggttccacatgcctgccgagctggccatactacag
gagacactagcaaggctaacacagagctgtgtggcactcctgataagaccaaggctactc
cagcatatgcttgagaagaaaacaaatgccaaagattctagtcatagtcatgcggtatcc
gagataatgcatacaatacccaggagattacttcaacaccaggtatccaccgaccaatca
gatgcgagcattagtgacgatgcccaagatgtacagtcaagacttttgttgatcatggga
agaatattggcttcattccgtctctttagtccagatcttcttgaatcactgctgaaccag
agccttgaagtgtccgaatatccaatgctctactgccttgggttcagcacgccctctctt
gaccaaaagacaccagcttcatttggaacactcatctcgtgtattaattggtgtctccaa
atgcttccaaagctggatgttaacaaatctcccatgaaggtgatagatcagaaaaatgtt
ccatcctcttcagattcaaaggctttgcaaaggccagcactgctatttgttctggagaat
gctgttcatttgatcatggctcaagggatgaggaccttgagagatcctactgttccaacc
agagatagacaactactcagaagagaactgggttcagaattgaatacattcctgattagt
ctgcagaggtacttccgtcggggcaagcctggctccccttccgatgcgagccccggaacc
tcttctgcccgtcttggaaccagctcggcaacttccgtgatgagcaaggcttccctgaat
gctgcattcactgaagccaaggaacaactcttctttaaggtcgtccagacgtttgttcaa
cagttgagtaaatga
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integrated database retrieval system
