Lytechinus pictus (painted urchin): 129278144
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Entry
129278144 CDS
T09066
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129278144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129278144
03041 Spliceosome [BR:
lpic03041
]
129278144
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129278144
Spliceosome [BR:
lpic03041
]
Complex B
Other components
Prp19-related factors
129278144
Complex C
129278144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_1
TPR_15
TPR_12
NRDE-2
DALR_1
PPR
Motif
Other DBs
NCBI-GeneID:
129278144
NCBI-ProteinID:
XP_054770336
LinkDB
All DBs
Position
15:complement(2101510..2120069)
Genome browser
AA seq
430 aa
AA seq
DB search
MPILGHEHQRDLIFEEDDLAYEEEILRHPFSVKCWLRYAEHKSNGPSVGLHLIYERALKE
LPGSYKLWYNYLKLRRKAIKGRCITDPGYEDVNNAFERALVFMHKMPRIWLDYCQFLMDQ
CKVIRTRRTFDRALRALPISQHHRIWPLYLKFVRSMPLHETAVRAYRRYLKLCPENAEEY
IEYLVDILRLDEGAVRLADIVNQETFVSKEGKSNHQLWHDLCDLICKHPTKVTSLKVDPI
IRGGIKRFSDERGKLWCSLADYYIRSGHFEKARDIYEEAIFTVITVRDFTQVFDAYAQFE
ESMLKAKMETSAESGSTEEDDIDIELRLERFEDLMDRRPLLLNSVLLRQNPHNVHEWHKR
AKLFEGKPKEVINTYTEAVQTVTPQLATGKLHTLWVEFAKFYEKHGQVMEVRNHFYFSSE
FQLLEICRSV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgccgatattagggcatgaacaccaaagagacttgatatttgaggaagatgacttggcc
tatgaagaagagatcttacgtcatccattctctgtcaaatgctggctacgctatgctgag
cacaaatctaatggcccttctgtaggactacatctcatctatgagagagctctaaaggag
ttacctggaagctacaagctatggtataactacctcaaactgagaagaaaggccatcaaa
ggtcggtgtattactgacccaggatatgaggatgtcaacaatgcctttgaaagagctttg
gttttcatgcataagatgcctagaatatggcttgactactgccagttcttgatggaccag
tgcaaggtcattcggacacgccggacgtttgaccgtgccttgagggcgctgcccatatcc
cagcatcacaggatctggcctctgtacctgaagtttgtccgctccatgccactccatgag
acagctgtcagggcctacaggagatacctcaagctgtgtcctgagaatgcagaggaatac
atagagtatcttgtagatattttgcgtttggatgagggcgctgttcgtttggccgacatt
gtcaaccaagagacatttgtttcgaaggaaggcaaatcaaaccatcagctttggcacgac
ctctgtgacctgatatgcaaacatccaaccaaagtgacatcactcaaggttgatcccatt
atacggggagggatcaaacgcttctctgatgagaggggcaagctttggtgctctctggct
gactactatatcaggagtggtcactttgagaaggcaagagacatctatgaggaagcaatc
ttcactgtgataactgtcagggatttcacccaggtctttgatgcatatgctcagtttgag
gagagcatgctaaaagcaaagatggaaacatctgcagaatctggttcaactgaggaagat
gacattgacatagagctgaggcttgaacggtttgaagacctaatggacaggcgccctctg
ttgttgaatagtgtcctattgagacagaatccccataatgttcatgagtggcataaaagg
gcaaaactttttgaagggaaacctaaagaagtgattaacacatacacagaagctgtgcag
actgtgactcctcagctagcaacagggaaacttcatactctgtgggtagagtttgctaag
ttctatgagaagcatggtcaagtaatggaggtaagaaatcatttttatttttcatcagag
tttcaattgttagaaatttgcagatcagtttaa
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