Lytechinus pictus (painted urchin): 129278324
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Entry
129278324 CDS
T09066
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129278324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129278324
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129278324
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
129278324
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
RRP40_S1
Lantibiotic_a
Motif
Other DBs
NCBI-GeneID:
129278324
NCBI-ProteinID:
XP_054770496
LinkDB
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Position
15:complement(13626103..13634766)
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AA seq
291 aa
AA seq
DB search
MAISITAPRERRVCDEFTEPQRLVTPGATITADTDFMRGHGTYMEEDELIASVAGVVETV
NKLISVRPLKTRYNGEVGDVIVGRIQEVGQKRWKVDVNSRLNAILMLSAVNLPGGELRKR
SAEDELKMRQYLTEGDLISAEVQSVFSDGALSLHTRSLKYGKLGQGIMVRVSPSLIKRRK
THFHNLTCGASIILGNNGYVWISRTPTEEEEAPDGGFIQNLEPVPDEDRRVLARLRNCVL
GLADHRMMLYDTSVIYTYNASEEYPVADLLNPDVMKEVILLVRQKLSQEAT
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcaatatccatcaccgctcctcgtgaaagacgagtttgtgatgaatttacagaacct
caacgattagtaacaccaggagcaaccattacagccgacacagattttatgaggggccat
ggaacttacatggaagaagatgaacttattgcatctgtggcaggagtggtagagactgta
aacaaactcatcagtgtcaggcctctcaaaacaagatacaatggagaagtcggtgatgtc
atcgttggaagaatacaggaggtcggacagaagaggtggaaagtagatgtcaattcccgt
cttaatgccatcttgatgctatctgccgttaaccttcctggaggagagctcaggaagaga
tcggctgaggatgaactgaagatgcgtcaatacctcaccgagggagatctcatcagtgcc
gaggttcagtcggttttttcagatggcgccctctcactgcacacaaggagtctcaagtac
gggaagctagggcagggtatcatggtgcgagtgtcgccctctctcatcaagagacggaaa
actcacttccacaacctgacctgcggagcttccatcatcttgggtaacaatggctatgtc
tggatcagtaggacaccaacagaagaggaggaggcaccagatgggggcttcatccaaaat
cttgaacccgtccccgatgaggaccggagggtgttggcacggttacggaactgcgtctta
ggtctggctgatcacaggatgatgttgtatgacaccagtgtcatctatacctacaatgcc
tcagaggaatatccagttgccgatctgctgaaccctgacgtcatgaaagaagtcatactc
ttggtacgacagaagctgagtcaagaagcaacgtaa
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