Lytechinus pictus (painted urchin): 129279379
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Entry
129279379 CDS
T09066
Name
(RefSeq) ATP-dependent RNA helicase DDX3Y-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lpic
Lytechinus pictus (painted urchin)
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpic03019
]
129279379
03041 Spliceosome [BR:
lpic03041
]
129279379
03036 Chromosome and associated proteins [BR:
lpic03036
]
129279379
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129279379
Messenger RNA biogenesis [BR:
lpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129279379
mRNA cycle factors
Common to processing body (P body) and stress granule
129279379
Spliceosome [BR:
lpic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129279379
Chromosome and associated proteins [BR:
lpic03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
129279379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129279379
NCBI-ProteinID:
XP_054771448
LinkDB
All DBs
Position
16:676418..700320
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AA seq
702 aa
AA seq
DB search
MAVPHPAMGYPAQPPPPFTAPPPQAQGYSGGYDGGSGGNYGRGGYNNQGRGGGYNSRGGY
NREGGRGGYNRDQGSSYNGRGGGGGGGRYNDQQSGSYQNRNSYQGGGRGGFQSPQGQGGP
GGYQPRGGGNYNSRLDWGPRGGGAPQQGGGDTFWGVRGQQNQDGWGRAEDYRGRDVPRVE
QDEDWTKPLPRNTRVENELFGSSNTGINFDKYADIPVEATGTNSPAPIEQFSDIDLGDII
RNNTELCNYNTPTPVQQYAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIFESGPHKHS
VGCYRKKQFPLALILSPTRELTSQIYDEARKFSYRSHVRPCVVYGGADVKGQIADLERGC
HLLVATPGRLVDMLERGKIGLEKIRWVVLDEADRMLDMGFEPQIRRIVEEDEMPKVGERQ
MLMFSATFPKEIQVLARDFLKDYIFLAVGRVGSTSSNITQKIVWVEEGDKRSFLLDLISA
SGAGSLTLVFVETKKGADALEDFLLREKFQATSIHGDRSQKEREEALKTFRSGRTPILVA
TAVAARGLDICNVKHVINFDLPTDIEEYVHRIGRTGRVGNTGLATSFFNEKNRNISRDLA
DLMIEAKQEVPNWLDALASEAKNSGGSSRRGRNRYAGGFGSRDYRQANNRGGRGGGVSSG
YGGHQTGGHGGGNSFPVYQPHYGGNYGGSYNQSSGGQDWWGN
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccacacccagccatgggctatccagctcaacctcctcctccattcactgca
cccccaccccaagcccagggctacagcggtggatatgatggtggttccggtggcaactac
ggccgcggcggatacaacaaccaaggaagaggaggcggttacaacagccgaggtggctac
aacagagaaggcggccgtggtggatacaaccgtgaccaaggcagcagctacaatggacga
ggaggtggtggtggtggtggacgttacaatgatcagcaatcgggatcatatcagaacagg
aatagttaccaaggtggtggacggggtggattccagagtccacaaggacagggaggacca
ggaggataccaacctcgtggtggtggtaattataacagccgtctggactggggacctcgt
ggtgggggagccccacagcagggtggcggtgataccttctggggtgtccgaggccaacag
aaccaggatggctggggtagggccgaggactaccgtgggcgtgatgtgccacgtgtagag
caagacgaggattggactaagcctctcccaagaaacacccgtgtagaaaatgaattgttt
ggaagttccaacactggaatcaactttgacaaatatgctgacatccctgtagaggctaca
ggaaccaattcaccagctcccattgaacagttcagtgacattgacttgggtgacatcatc
cgtaacaacacagaactgtgtaactacaacaccccaacccctgttcagcagtatgctatt
cctatcatcaagggaaagagagatctcatggcctgtgctcagactggttctggaaagact
gctgctttcttgcttcctattctctcccaaatctttgagagtggacctcacaaacattct
gtgggttgctaccgtaagaagcagttccctcttgctttgattctatccccaactcgtgag
ctgacatctcagatctacgatgaagccaggaagttttcctaccgttctcacgttcgtccc
tgtgtggtatatggaggagcggatgtcaaaggtcagatcgctgatttggagaggggttgc
catctccttgttgctacgccaggacgtctggttgacatgttggagaggggcaagatcggt
cttgagaaaatcagatgggtggtccttgatgaggctgatcgtatgcttgatatgggtttt
gaaccccagattcgccgcatcgtagaggaagatgaaatgcccaaagttggagagagacaa
atgcttatgttcagtgccaccttccccaaggaaattcaggttctggcccgtgacttcttg
aaagactacatcttcttggctgttggtcgcgttggtagtactagcagcaacatcacccag
aagattgtctgggtggaggaaggagacaagagatccttccttttggatttgatctccgcc
tcaggtgctggatctctaaccctggtgtttgttgagaccaagaagggagctgatgctcta
gaggatttcctcctccgggagaagttccaagccaccagtatccatggtgatcgctcccag
aaggaacgtgaagaagccctgaagaccttccgtagtggccgcactccaattctggtcgct
accgctgtggccgcccgtggtcttgatatctgcaacgtgaagcacgtcatcaactttgat
ctgccaacagacattgaggagtatgttcaccgtattggtcgtactggacgtgtcggcaac
acaggtcttgcaacgtctttcttcaatgagaagaaccgtaacatctcccgtgacttggct
gatctgatgattgaagccaagcaggaagtacccaactggcttgatgctctcgctagcgag
gccaaaaacagtggaggctcatcacgacgtggacgtaacaggtacgctggagggtttggt
tcccgtgactaccgtcaggccaataaccgcggtggacgtgggggcggagtctccagcggc
tatggaggtcaccagaccggcggacatggcgggggcaacagcttccccgtctaccagcct
cattacggcggtaactacggaggtagctacaaccagtccagtggcggtcaggactggtgg
ggcaactag
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