Lytechinus pictus (painted urchin): 129281359
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Entry
129281359 CDS
T09066
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129281359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lpic03041
]
129281359
Enzymes [BR:
lpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129281359
Spliceosome [BR:
lpic03041
]
Complex A
U2 snRNP components
U2 related factors
129281359
Complex B
129281359
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
129281359
NCBI-ProteinID:
XP_054773278
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All DBs
Position
18:complement(4592915..4623068)
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AA seq
1192 aa
AA seq
DB search
MKGYYLSCRQYRKRSQSKSPEADDDSSKKKRSPERSKDKDKEKERRRSRSRSKSKERSRK
SRSRERDRRSRSKERERRSRSRERERDRSRRSRSRERDRRRDRRSPPRRDRDRDRDRDRD
RDRDRRSRRSRSRDRTRRRRSRSRTRSPKRNKRSRSRGRRSPSADRASRSRSRSPNKDSK
SRGSSSSAVKMETAVKVEGKVETEMKKEAEVKQEIKIKEEKKDESKEVKEEKGLVLEQRR
LEEEMQKRRERIERWRMERKKTMEAAAGPSKTEGEEEKVDAPPQKPGKKWSLEDDDDADD
EAEAEDESKESKKSPPGSLGKDDDDEEKMDVDKKEDEKKTEEDDDDDDIDPLDAFMMGVQ
AEVKKISSKDKKTPPPVEKAVKANNNGNGTGEAPKFSIVTGVVKKKSVPVPTPVVTTPRR
KGELMENDQDAMEYSSEEEKESTLMDTMAAIEQKKKKELAKVDHSKIEYQPYRKDFYIEV
PELARLTPEEVDKRRSDLEGIKVRGKNCPKPVDSWVQCGVSQRVLTVLKKNNYEKPTPIQ
CQAIPAIMSGRDLIGIAKTGSGKTMAFLLPMFRHIMDQDPLESDDGPVSLIMTPTRELAM
QIFKECKKFTKSMGLRAVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTN
LRRCTYLVLDEADRMFDMGFEPQVMKIVENIRPDRQTVLFSATFPRQMEALARKILTKPI
EVQVGGRSVVCSDVTQHALILEEDQKFLKLLELLGYYDEGQILVFVEKQESADLLLKDLM
KASYPCLALHGGIDQYDRDSIIQDFKAANVKILVATSVAARGLDVKKLVLVINYDCPNHY
EDYVHRVGRTGRAGNKGFSYTFLTPEQAKYAGDVIKAFELSGSKVPGELTEMWSFYCNQQ
KSEGKEVIRNSGFSGKGFKFDDTERELANEKKKLQKAALGLQDSDDEDAGMDIDEKIETM
FASKRRVKDVTADEMPVIQQPQVNPATPQQPGMVPGGAAAVPAGANQAMLSLAKRMAAKI
NKNLESERSVDMIQQATQAVMKGATLGQPSVSAFTRAEQLAGKLNAKLNYIPKINEEEKE
EEQPKPTFRKYEEELEINDFPQTARWKVTSKENLAQIQDYSEAGITIRGTYFPPGKEPKE
GEGERKLYLAIESVSERAVSKAKAEITRLVKDELVRLQNSYQPTNKGRYKVL
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggctattatctttcttgcaggcaatatcgcaagaggtcacaatccaaatccccc
gaagctgatgatgacagctccaagaagaaacgatctccagagagatcaaaggataaggac
aaggagaaagaaaggaggaggtcacgttccaggtctaagagcaaagaaaggtcacgaaag
tcgcgcagcagagagagagatcgtaggtctcgcagcaaagagagggagcgtagatcgcgc
agcagagagagagaacgtgataggtcgagaaggtcaagatccagagaaagagacagaaga
agagatagaagaagtccccctcgaagagacagggatagagatcgagatagagaccgcgat
agggaccgagacaggagatccaggcgctcaaggagcagggacaggaccaggagacggagg
tccaggtctcgcaccaggagtcccaagcgaaacaagagaagtcggagcaggggtcggagg
tcaccgtctgccgatcgagcatctaggtctcgttcgagatctccaaacaaggacagcaaa
tccagaggatcatcatcttccgctgtgaaaatggaaacagcagtcaaggttgaggggaag
gtagagacagagatgaagaaggaagcggaagtaaagcaagagatcaagatcaaggaagag
aagaaagatgagagtaaggaggtcaaggaagagaaaggattggttttggagcaaagacga
ctggaagaggagatgcaaaagagaagagagcgaattgagagatggaggatggagaggaag
aagactatggaagcagcagcaggaccatccaagacagaaggggaggaggagaaggttgat
gcccctcctcagaaaccaggcaagaagtggagtctggaggatgatgatgatgccgatgac
gaagcagaggcagaggatgaatctaaagaaagtaagaagtcaccccctggaagtctgggt
aaggacgacgacgacgaggaaaagatggacgtcgacaagaaggaggatgagaagaagaca
gaggaggatgacgacgacgatgacatcgaccctcttgatgctttcatgatgggtgtgcag
gcggaggtgaagaaaattagcagtaaggacaagaagactcctccaccggttgagaaggca
gttaaagccaacaacaatggaaatggcacaggagaggcccctaagttcagcatagtaaca
ggtgtagtgaagaagaagagtgttccggtgcccacaccggtggtcaccacacccaggagg
aaaggggaactaatggagaatgatcaagatgccatggagtattcctctgaggaagaaaaa
gagagtaccctgatggacaccatggcagccattgagcagaagaagaagaaagaattagcc
aaggtagatcattctaagattgaatatcaaccctacaggaaagatttctacatagaggta
ccggagcttgcccgtcttaccccagaagaggttgacaagagacgttctgacctggaagga
atcaaggtccgtggtaaaaattgtcctaaaccagtagactcctgggtgcagtgcggtgtc
tcccagagagtcctcacagtcctcaagaagaataactatgagaagccgacacccatccag
tgccaagccatcccggcgatcatgtcgggtcgcgacctcatcggtatcgccaagaccggg
agcgggaagacgatggcgtttctgttgcctatgtttagacacattatggaccaagaccct
cttgagagtgacgatggacctgtctctttgataatgactcctaccagagaattagccatg
cagattttcaaggagtgcaagaagttcaccaagtccatgggtttgagggcggtatgtgta
tatggagggacaggcatcagtgaacagattgccgagctgaagcgtggagcagagatcatt
gtttgcactccaggaagaatgatagacatgcttggtgctaataatggtcgcgtcacaaat
cttcgtcggtgtacctaccttgtcttggatgaagctgatagaatgtttgacatgggattt
gaaccacaggtgatgaagattgtagagaacatccgccctgataggcagacagtcttgttc
tctgccacgtttccccgtcagatggaagcattggccaggaagatcttgaccaagcctatt
gaagtccaggttggaggtcgtagcgtggtgtgctccgatgtcacccagcatgctttgatt
cttgaggaggatcagaagttcttgaagcttcttgaactgttgggttactatgacgaagga
cagatcctagtctttgtggagaagcaggaatctgcagatcttctactcaaagatctaatg
aaagcatcctacccatgccttgctttacacggtggtatcgaccagtatgacagagattcc
atcattcaggatttcaaagctgctaatgtgaagatccttgttgcaacatcagtggcagca
agaggtctggatgtgaagaaacttgttcttgttatcaactacgattgtcctaatcactac
gaggattatgtacacagagttgggcgcacagggagagcaggaaacaagggattctcctac
accttcctgacccctgagcaggccaagtatgccggggatgtcatcaaggcctttgagctg
agtggttccaaggtacctggagagcttacagagatgtggagcttctactgtaatcaacaa
aaatctgaaggtaaagaggtgattaggaatagtggtttcagcggaaaaggtttcaagttt
gatgataccgagagagaacttgccaatgagaagaagaagcttcagaaggctgctcttggt
cttcaagattccgatgatgaagatgccggcatggatatcgatgagaagatcgaaaccatg
tttgcatcgaagcgacgcgtcaaggacgtcacggcggacgaaatgcccgtcatccagcaa
ccccaagtgaatcctgccacaccccagcaaccgggcatggtaccgggcggggccgctgct
gtacccgctggggccaaccaggccatgttgagcctggctaagcggatggccgcaaagatc
aataagaatttggagagcgagaggagcgtggatatgatacagcaggctacccaagctgtg
atgaaaggcgctacgcttgggcaaccttctgtatccgcattcacgagggccgagcagctg
gcaggtaaactcaatgccaaactcaactacattccaaagattaacgaagaagagaaggag
gaggagcagcccaaaccaactttcaggaaatatgaggaggaattggaaatcaatgacttc
ccacagactgccaggtggaaggtcacatcaaaggagaaccttgcccagatccaggactac
agtgaagcagggatcaccatcagaggcacctacttcccaccaggcaaggaacctaaggaa
ggagaaggagaaagaaagctctatctggctatcgaaagtgtcagtgaaagagctgtttct
aaggcaaaggcagaaataacaagattagtcaaggatgaactagtcagattgcaaaactcc
tatcaacctaccaacaaaggaaggtacaaggttctttga
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integrated database retrieval system
