Limnochorda pilosa: LIP_0727
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Entry
LIP_0727 CDS
T04150
Name
(GenBank) hypothetical protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
lpil
Limnochorda pilosa
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpil03019
]
LIP_0727
Messenger RNA biogenesis [BR:
lpil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LIP_0727
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
HDOD
Motif
Other DBs
NCBI-ProteinID:
BAS26584
UniProt:
A0A0K2SIB6
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All DBs
Position
complement(760506..761564)
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AA seq
352 aa
AA seq
DB search
MFKRRFIEDLRPGERLADFFVASDKELARTQNGKAFLRLHLSDRTGRLPAVAWDDAESLW
KSFDDGSVVKVETELGTYRGQEQFTVFRLRRATPEEIEEEAYLPSSRRPLGEMEAELQEV
VSGVRDPWLQALLARFFSPGSEGLRRYVRHTAATGVHHAYVGGLLEHVLEMVRIARTLCS
LHPEYVNEDLVVAAVLLHDVGKLEEYAMDGMAFRQTDLGRLYGHLYQGARWVEQEAAAID
GFPEPLAQELIHCILSHHGLQEHGAVVVPQTLNAQVLHYADLVSARLNQFRQLIEGKGRQ
ATLETWSEFDRFLGVRAFRGFLEPPAGAQHSPEGSPDALPGAGPEAMGATGR
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaagcggcgcttcatcgaagacctgcggcccggggagcggctggcggacttcttc
gtcgcctccgacaaggagctggcccgcacccagaacgggaaggccttcctccggctccac
ctctcggaccggacgggccgcctccccgcggtggcctgggacgatgccgagtccctgtgg
aagagcttcgacgacggaagcgtcgtgaaggtggagacggagctcggcacctaccggggg
caggagcagttcaccgtcttccgcctgcggcgggccacgcccgaggagatcgaggaggag
gcgtacctcccctcctcccgccggccgctgggggagatggaggccgagcttcaggaggtc
gtctcgggggtccgggacccgtggttgcaggcgctgctcgcgcgcttcttctctcccggc
agcgagggcctgcgccgctacgtgcgccacacggccgcaacaggggtccaccacgcgtac
gtgggcggactgctggagcacgtgctggagatggtgcgcatcgcccgcaccctctgctcc
ctccacccggagtacgtcaacgaggacctggtggtcgcggccgtgctcctgcacgatgtg
ggcaagctcgaagagtacgccatggacggtatggctttccgccaaaccgacctggggcgg
ctctacgggcacctctaccagggggcccggtgggtagagcaggaggcggctgccatcgac
ggcttccccgagcctctggcccaggagctgatccactgcatcctgagccaccacgggctg
caggagcacggcgcggtggtggtcccccagacgctgaacgcccaggtcctccactacgcg
gacctggtgagtgcccgtctgaaccagttccgccagctcatcgaggggaaggggcggcag
gcgacgctggagacctggtctgaattcgaccggttcctgggggtccgtgccttccggggc
ttcctggagccgccggccggcgcccagcactcccccgagggctcgccggacgcgctgccc
ggtgcgggacccgaggcgatgggcgcgacggggaggtga
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