Limnochorda pilosa: LIP_1498
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Entry
LIP_1498 CDS
T04150
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lpil
Limnochorda pilosa
Pathway
lpil03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LIP_1498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpil03400
]
LIP_1498
Enzymes [BR:
lpil01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LIP_1498
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LIP_1498
DNA repair and recombination proteins [BR:
lpil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LIP_1498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAS27346
UniProt:
A0A0K2SJQ7
LinkDB
All DBs
Position
1599230..1600042
Genome browser
AA seq
270 aa
AA seq
DB search
MERIRRELAQVLVGRRITGIELLEERLPQNTGPEELEAVVGRRVRRVRRRGKYLLLDLEG
RGLLVLHLRMSGRLLFREPGRDGAVRPSHVRLRLGVEGGGELVLVDPRRFGLLYWLPAGG
ARRVPGLAAMGPEPLGRRFTREELGRILSGRAAAVKAVLMDQRRLAGVGNIYADEALFRA
GIRPDRPAGSLSAQEVGRLHQALRAVLREGIRRGGVTVRSYAGIHGEMGRFQEVLQVYGR
KGEPCLRCGAPLRGARVSGRSSVYCPACQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtggagcggatccgccgggagctggctcaggtgctggtggggcggcgcatcacggggatc
gagctcctggaggagcgcctgccccagaacacgggccctgaggagctggaggcggtggtg
gggcgcagggtgcggcgggtccgccggcgggggaagtacctgctgctggacctggagggg
cgcgggctcctggtgctccacctgcgcatgagcgggcgcctcctcttccgggagccggga
cgcgacggggccgtccgaccctcccacgtccgcctgcgtttgggtgtggagggtggggga
gagctggtgctggtcgatccgcgccgcttcggcctcctctactggctgcccgcgggcggg
gcgcggcgggtgccgggtctggcggccatgggcccggaaccgctgggccggcggttcacg
cgggaggaactgggccgcatcctgtcggggcgggcggcggcggtgaaggccgtgctcatg
gaccagcggcggctcgcgggcgtggggaacatctatgcggacgaggcgctcttccgggcg
gggatccgccccgaccggcccgcgggcagcctctcggcccaggaagtgggccggctgcac
caggcgctgcgggcggtgctgcgggaaggcatccgccggggaggggtgaccgtgcgctcg
tacgccggaatccacggcgagatggggcgcttccaagaggtgctccaggtgtacggccgg
aagggcgagccatgcctccggtgcggggcccccttgcgcggggcgcgggtgagcggccgc
agctccgtctactgcccggcctgccagcggtga
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