Limnochorda pilosa: LIP_1699
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Entry
LIP_1699 CDS
T04150
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lpil
Limnochorda pilosa
Pathway
lpil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LIP_1699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpil03019
]
LIP_1699
03016 Transfer RNA biogenesis [BR:
lpil03016
]
LIP_1699
Enzymes [BR:
lpil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LIP_1699
Messenger RNA biogenesis [BR:
lpil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LIP_1699
Transfer RNA biogenesis [BR:
lpil03016
]
Prokaryotic type
tRNA degradation factors
LIP_1699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
SPATA25
Motif
Other DBs
NCBI-ProteinID:
BAS27545
UniProt:
A0A0K2SKC1
LinkDB
All DBs
Position
1793822..1796113
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AA seq
763 aa
AA seq
DB search
MNMAESFQMELAGRTLVLETGKLAGQANGAVLVRYGETVVLVTATMSKQPREGIDFFPLL
VDYEERMYAIGRIPGGWGRREGRPPEGAILAARMIDRTLRPLFPDGFRNDVQVVATILSV
DHDNSPEIAAMAGASAALTISDIPFLGPIAGVRVGLVDGRLVLNPTSEQSEASDLNLVVA
GTRDAVMMVEAGANEVPEEQVLEAILFGHEEIKRVIALQDQMREKIGRPKVEPALYQPDP
AVAEWTRAWVEPKLEGAVKNPDKLARQDAVDLLRKEVVEAFEAERGEEATAHVKDVEVVF
DKLLKEFVRKTITEDRERVDGRGLEEIRPIWCEVGLLPRVHGSGLFTRGQTQVLSSVALG
LKSDEQLLDDLREEDRKRYIHHYNFPGFSTGEVRPMRSVGRREIGHGALAERALLPVIPS
QEEFPYTVRVVSEVLSSNGSTSQASICGSTLALMDAGVPIRKPVAGVAMGLVKHGERFAV
LTDIQGIEDALGDMDFKVAGTRDGVTAIQMDIKIKGIDREILRTALEQARKGRLFILDKM
EAVIDRPRPSLSPYAPRVITLQIPVDRIRDVIGPGGKVVRNIIDQTGVQIDIEDDGHVYI
ASIDEEGGRRAQEMVESLVRDVEVGATYRGKVKRITNFGAFVEILPGKEGLVHISKLAPG
RVGRVEDVLQLGDDVAVKVTDIDELGRINLSRKDALTQEQWAAEEARFPSNGQQDREGRD
SGFGGERRGGPREHGGEHRRPPRRDGDRRRSPRPGGGGRPRES
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatggcagagagtttccagatggagctcgccggccggacgctggtgctcgaaacc
ggcaagctggccgggcaggcgaacggggcggtcctcgtgcgctacggggagacggtggtg
ctggtgacggccaccatgtccaagcagccccgggaggggatcgacttcttcccgctgctg
gtggactacgaagagcggatgtacgccatcggccgcatccccggcggctggggccggcgg
gagggccgtcccccggagggcgccatcctcgcggcgcgcatgatcgaccgcacgctccgc
cccctctttcccgacgggttccggaacgacgtgcaggtggtggccaccatcctctcggtg
gaccacgacaactcgccggagatcgcggccatggcgggggcgtcggcagcgctcaccatc
tcggacatccccttcctggggcccatcgccggtgtgcgggtgggcctggtggacgggcgc
ttggtcttgaaccccaccagcgagcagtccgaggcgagcgaccttaacctggtggtggct
ggaacccgcgacgcggtgatgatggtcgaggcgggtgccaacgaggttccggaggagcag
gtcctggaggcgatcctcttcgggcacgaggagatcaagcgggtgatcgccctgcaggat
cagatgcgggagaagatcggccggcccaaggtggagcccgcgctctaccagcccgacccg
gccgtggccgagtggacgcgcgcctgggtggagcccaagctcgagggagccgtgaagaac
cccgacaagctggcgcgccaggacgcggtggacctcctgcgcaaggaggtcgtggaggct
ttcgaggccgagcgcggcgaggaggcgaccgcccacgtgaaggacgtggaggtcgtcttc
gacaagctgctgaaggagttcgtccggaagaccatcaccgaggaccgcgagcgggtcgac
gggcgcgggctggaggagatccgccccatctggtgcgaggtgggcctcctgccgcgggtg
cacggttcgggcctcttcacccgcgggcagacccaggtgctctcgtcggtcgccctcggg
ctcaagtcggacgagcagctcctggacgacctgcgcgaggaagaccgcaagcgctacatc
caccactacaacttcccaggcttctccaccggcgaggtgcgtcccatgcgctcggtggga
aggcgtgagatcgggcacggggccctggccgagcgggcgctcctccccgtcatcccttcc
caggaggagttcccctacaccgtccgcgtcgtctccgaggtcctctcctccaacggctcc
acctcccaggccagcatctgcggctccaccctggccctgatggatgcgggcgtgcccatc
cgcaagcccgtggcgggggtggccatggggctggtgaagcacggagagcgcttcgcggtg
ctcaccgacatccagggcatcgaggacgccctgggcgacatggacttcaaggtggccggc
acccgcgacggggtcacggccatccagatggacatcaagatcaagggcatcgaccgggag
atcctgcggacggcgctggagcaggcgcgcaagggtcgcctcttcatcctggacaagatg
gaagcggtcatcgaccggccgcggcccagcctgtcgccctacgccccgagggtgatcacc
ctccagatccccgtggaccggatccgggacgtgatcggccccggcggcaaggtggtccgg
aacatcatcgaccaaaccggcgtccagatcgacatcgaggacgacggccacgtctacatc
gcctccatcgacgaggagggcgggcgccgggctcaggagatggtggagagcctggtgcgg
gacgtggaggtgggcgcgacctaccgcgggaaggtcaagcggatcaccaacttcggcgcc
ttcgtggagatcctgccgggcaaggaggggctggtgcacatctccaagctggccccgggc
cgggtggggcgcgtggaggacgtgctgcagctgggagacgacgtcgcggtgaaggtcacc
gacatcgacgagctggggcggatcaacctctcgcgcaaggacgcgctgacccaggagcag
tgggcggccgaggaggcccgcttcccatccaacgggcagcaggatcgagaggggcgggac
tccgggttcggcggcgagcgccgcggcgggcccagggagcacgggggcgagcatcgccgg
ccaccgcgtcgtgacggggaccgccgtcggtcgccccggcccgggggcggcgggcgcccg
cgggagtcgtag
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